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BaseInfo

ncRNA ID	novel_zma_miR9729
Species	Zea mays
Class	miRNA
Genome position	Chr9:152047373-152047486 [-]
Reference genome	RefGen_v4
Source	SRR4237226
Length	24
Mature sequence(if miRNA)	91 - UUCGGUUGUUCUGGAUUGGAGCCC - 114
Stem-loop(if miRNA)	--         U     UUG     CC     A     U   CGG    CUUC    AU   UUCGGUUGU CUGGA   GAGCC  GGAUU AUUCC AGC   AUUA    UCUA  U   ||||||||| |||||   |||||  ||||| ||||| |||   ||||    ||||  U   AAGCCAACA GGCCU   CUCGG  CCUAA UAAGG UCG   UAGU    AGAU  A AC         U     -UA     -U     G     -   -AA    -UUU    AU
Stem-loop sequence	UUCGGUUGUUCUGGAUUGGAGCCCCGGAUUAAUUCCUAGCCGGAUUACUUCUCUAAUUUAUAUAGAUUUUGAUAAGCUGGAAUGAAUCCUGGCUCAUUCCGGUACAACCGAACA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235152.1	ncRNA:24   CCCGAGGUUAGGUCUUGUUGGCUU   1   ||||||||||||=||||||||||| targets:98   GGGCUCCAAUCCGGAACAACCGAA   121 Target Full Sequence	1.5	Sequence 1147 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235043.1	ncRNA:24   CCCGAGGUUAGGUCUUGUUGGCUU   1   ||||||||||||=||||||||||| targets:98   GGGCUCCAAUCCGGAACAACCGAA   121 Target Full Sequence	1.5	Sequence 1038 from Patent EP2985353	NA	coding protein	psRNATarget
HI405922.1	ncRNA:24   CCCGAGGUUAGGUCUUGUUGGCUU   1   ||||||||||||=||||||||||| targets:98   GGGCUCCAAUCCGGAACAACCGAA   121 Target Full Sequence	1.5	Sequence 4047 from Patent EP2074227	NA	coding protein	psRNATarget
JB163483.1	ncRNA:24   CCCGAGGUUAGGUCUUGUUGGCUU   1   ||||||||||||=||||||||||| targets:98   GGGCUCCAAUCCGGAACAACCGAA   121 Target Full Sequence	1.5	Sequence 1147 from Patent EP2559767	NA	coding protein	psRNATarget
HI402913.1	ncRNA:24   CCCGAGGUUAGGUCUUGUUGGCUU   1   ||||||||||||=||||||||||| targets:98   GGGCUCCAAUCCGGAACAACCGAA   121 Target Full Sequence	1.5	Sequence 1038 from Patent EP2074227	NA	coding protein	psRNATarget
JB166383.1	ncRNA:24   CCCGAGGUUAGGUCUUGUUGGCUU   1   ||||||||||||=||||||||||| targets:98   GGGCUCCAAUCCGGAACAACCGAA   121 Target Full Sequence	1.5	Sequence 4047 from Patent EP2559767	NA	coding protein	psRNATarget
JB163374.1	ncRNA:24   CCCGAGGUUAGGUCUUGUUGGCUU   1   ||||||||||||=||||||||||| targets:98   GGGCUCCAAUCCGGAACAACCGAA   121 Target Full Sequence	1.5	Sequence 1038 from Patent EP2559767	NA	coding protein	psRNATarget
HI403022.1	ncRNA:24   CCCGAGGUUAGGUCUUGUUGGCUU   1   ||||||||||||=||||||||||| targets:98   GGGCUCCAAUCCGGAACAACCGAA   121 Target Full Sequence	1.5	Sequence 1147 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238052.1	ncRNA:24   CCCGAGGUUAGGUCUUGUUGGCUU   1   ||||||||||||=||||||||||| targets:98   GGGCUCCAAUCCGGAACAACCGAA   121 Target Full Sequence	1.5	Sequence 4047 from Patent EP2985353	NA	coding protein	psRNATarget
HI407312.1	ncRNA:24   CCCGAGGUUAGGUCUUGUUGGCUU   1   ||||||||||||=||||||||||| targets:110   GGGCUCCAAUCCGGAACAACCGAA   133 Target Full Sequence	1.5	Sequence 5437 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239442.1	ncRNA:24   CCCGAGGUUAGGUCUUGUUGGCUU   1   ||||||||||||=||||||||||| targets:110   GGGCUCCAAUCCGGAACAACCGAA   133 Target Full Sequence	1.5	Sequence 5437 from Patent EP2985353	NA	coding protein	psRNATarget
JB167773.1	ncRNA:24   CCCGAGGUUAGGUCUUGUUGGCUU   1   ||||||||||||=||||||||||| targets:110   GGGCUCCAAUCCGGAACAACCGAA   133 Target Full Sequence	1.5	Sequence 5437 from Patent EP2559767	NA	coding protein	psRNATarget
JB163506.1	ncRNA:24   CCCGAGGUUAGGUCUUGUUGGCUU   1   ||||||||||||=||||||||||| targets:180   GGGCUCCAAUCCGGAACAACCGAA   203 Target Full Sequence	1.5	Sequence 1170 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235273.1	ncRNA:24   CCCGAGGUUAGGUCUUGUUGGCUU   1   ||||||||||||=||||||||||| targets:180   GGGCUCCAAUCCGGAACAACCGAA   203 Target Full Sequence	1.5	Sequence 1268 from Patent EP2985353	NA	coding protein	psRNATarget
JB163604.1	ncRNA:24   CCCGAGGUUAGGUCUUGUUGGCUU   1   ||||||||||||=||||||||||| targets:180   GGGCUCCAAUCCGGAACAACCGAA   203 Target Full Sequence	1.5	Sequence 1268 from Patent EP2559767	NA	coding protein	psRNATarget
HI403143.1	ncRNA:24   CCCGAGGUUAGGUCUUGUUGGCUU   1   ||||||||||||=||||||||||| targets:180   GGGCUCCAAUCCGGAACAACCGAA   203 Target Full Sequence	1.5	Sequence 1268 from Patent EP2074227	NA	coding protein	psRNATarget
HI403045.1	ncRNA:24   CCCGAGGUUAGGUCUUGUUGGCUU   1   ||||||||||||=||||||||||| targets:180   GGGCUCCAAUCCGGAACAACCGAA   203 Target Full Sequence	1.5	Sequence 1170 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235175.1	ncRNA:24   CCCGAGGUUAGGUCUUGUUGGCUU   1   ||||||||||||=||||||||||| targets:180   GGGCUCCAAUCCGGAACAACCGAA   203 Target Full Sequence	1.5	Sequence 1170 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008658753.2	ncRNA:24   CCCGAGGUUAGGUCUUGUUGGCUU   1   *|||||*||||||*|||||||||| targets:1896   AGGCUCAAAUCCAUAACAACCGAA   1919 Target Full Sequence	2.5	PREDICTED: Zea mays probable carboxylesterase 16 (LOC103636397), mRNA	NA	coding protein	psRNATarget
AY111146.1	ncRNA:24   CCCGAGGUUAGGUCUUGUUGGCUU   1   |*||||*||||||*|||||||||| targets:13   GAGCUCAAAUCCAUAACAACCGAA   36 Target Full Sequence	2.5	Zea mays CL11992_1 mRNA sequence	NA	coding protein	psRNATarget