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BaseInfo

ncRNA ID	novel_zma_miR9724
Species	Zea mays
Class	miRNA
Genome position	Chr8:10666611-10666741 [+]
Reference genome	RefGen_v4
Source	SRR4237226
Length	24
Mature sequence(if miRNA)	108 - AGGGGCUGCAAACACUCUGGUUUG - 131
Stem-loop(if miRNA)	--          G   A                   U         C  C     AUC  C    UA   AACCAGAGUG UUU CAGCCUCUCACAAAAAGGA GAUAGACCC AC UGUAG   CA CAGA  A   |||||||||| ||| ||||||||||||||||||| ||||||||| || |||||   || ||||  C   UUGGUCUCAC AAA GUCGGGGAGUGUUUUUUCU CUAUCUGGG UG GCGUC   GU GUUU  A GU          -   C                   C         A  A     ---  U    UU
Stem-loop sequence	AACCAGAGUGGUUUACAGCCUCUCACAAAAAGGAUGAUAGACCCCACCUGUAGAUCCACCAGAUAACAUUUUUGUUGCUGCGAGUAGGGUCUAUCCUCUUUUUUGUGAGGGGCUGCAAACACUCUGGUUUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AY111544.1	ncRNA:24   GUUUGGUCUCAC-AAACGUCGGGGA   1   ||||||||||||-|||||||||||| targets:859   CAAACCAGAGUGGUUUGCAGCCCCU   883 Target Full Sequence	3.0	Zea mays CL947_1 mRNA sequence	NA	coding protein	psRNATarget
X55314.1	ncRNA:24   GUUUGGUCUCAC-AAACGUCGGGGA   1   ||||||||||||-|||||||||||| targets:903   CAAACCAGAGUGGUUUGCAGCCCCU   927 Target Full Sequence	3.0	Zea mays A2 gene	NA	coding protein	psRNATarget
HI403058.1	ncRNA:24   GUUUGGUCUCACAAACGUCGGGGA   1   |||||||||*|||||||||||=|| targets:1   CAAACCAGACUGUUUGCAGCCUCU   24 Target Full Sequence	2.5	Sequence 1183 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235188.1	ncRNA:24   GUUUGGUCUCACAAACGUCGGGGA   1   |||||||||*|||||||||||=|| targets:1   CAAACCAGACUGUUUGCAGCCUCU   24 Target Full Sequence	2.5	Sequence 1183 from Patent EP2985353	NA	coding protein	psRNATarget
JB163519.1	ncRNA:24   GUUUGGUCUCACAAACGUCGGGGA   1   |||||||||*|||||||||||=|| targets:1   CAAACCAGACUGUUUGCAGCCUCU   24 Target Full Sequence	2.5	Sequence 1183 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235358.1	ncRNA:24   GUUUGGUCUCACAAACGUCGGGGA   1   ||||||||=*|||||||||||||| targets:2   CAAACCAGGCUGUUUGCAGCCCCU   25 Target Full Sequence	2.0	Sequence 1353 from Patent EP2985353	NA	coding protein	psRNATarget
JB163679.1	ncRNA:24   GUUUGGUCUCACAAACGUCGGGGA   1   ||||||||=*|||||||||||||| targets:2   CAAACCAGGCUGUUUGCAGCCCCU   25 Target Full Sequence	2.0	Sequence 1343 from Patent EP2559767	NA	coding protein	psRNATarget
HI403218.1	ncRNA:24   GUUUGGUCUCACAAACGUCGGGGA   1   ||||||||=*|||||||||||||| targets:2   CAAACCAGGCUGUUUGCAGCCCCU   25 Target Full Sequence	2.0	Sequence 1343 from Patent EP2074227	NA	coding protein	psRNATarget
HI403228.1	ncRNA:24   GUUUGGUCUCACAAACGUCGGGGA   1   ||||||||=*|||||||||||||| targets:2   CAAACCAGGCUGUUUGCAGCCCCU   25 Target Full Sequence	2.0	Sequence 1353 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235348.1	ncRNA:24   GUUUGGUCUCACAAACGUCGGGGA   1   ||||||||=*|||||||||||||| targets:2   CAAACCAGGCUGUUUGCAGCCCCU   25 Target Full Sequence	2.0	Sequence 1343 from Patent EP2985353	NA	coding protein	psRNATarget
JB163689.1	ncRNA:24   GUUUGGUCUCACAAACGUCGGGGA   1   ||||||||=*|||||||||||||| targets:2   CAAACCAGGCUGUUUGCAGCCCCU   25 Target Full Sequence	2.0	Sequence 1353 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020547144.1	ncRNA:24   GUUUGGUCUCACAAACGUCGGGGA   1   ||||||||=*|||||||||||||| targets:134   CAAACCAGGCUGUUUGCAGCCCCU   157 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103636662 (LOC103636662), mRNA	NA	coding protein	psRNATarget
XM_008653247.2	ncRNA:24   GUUUGGUCUCACAAACGUCGGGGA   1   |||||=||=*|||||||||||||| targets:17   CAAACUAGGCUGUUUGCAGCCCCU   40 Target Full Sequence	3.0	PREDICTED: Zea mays 50S ribosomal protein L18 (LOC103631773), mRNA	NA	coding protein	psRNATarget
LQ235517.1	ncRNA:24   GUUUGGUCUCACAAACGUCGGGGA   1   =|||||||**|||||||||||||| targets:1   UAAACCAGCCUGUUUGCAGCCCCU   24 Target Full Sequence	2.0	Sequence 1512 from Patent EP2985353	NA	coding protein	psRNATarget
HI403350.1	ncRNA:24   GUUUGGUCUCACAAACGUCGGGGA   1   =|||||||**|||||||||||||| targets:1   UAAACCAGCCUGUUUGCAGCCCCU   24 Target Full Sequence	2.0	Sequence 1475 from Patent EP2074227	NA	coding protein	psRNATarget
HI403387.1	ncRNA:24   GUUUGGUCUCACAAACGUCGGGGA   1   =|||||||**|||||||||||||| targets:1   UAAACCAGCCUGUUUGCAGCCCCU   24 Target Full Sequence	2.0	Sequence 1512 from Patent EP2074227	NA	coding protein	psRNATarget
JB163848.1	ncRNA:24   GUUUGGUCUCACAAACGUCGGGGA   1   =|||||||**|||||||||||||| targets:1   UAAACCAGCCUGUUUGCAGCCCCU   24 Target Full Sequence	2.0	Sequence 1512 from Patent EP2559767	NA	coding protein	psRNATarget
JB163811.1	ncRNA:24   GUUUGGUCUCACAAACGUCGGGGA   1   =|||||||**|||||||||||||| targets:1   UAAACCAGCCUGUUUGCAGCCCCU   24 Target Full Sequence	2.0	Sequence 1475 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235480.1	ncRNA:24   GUUUGGUCUCACAAACGUCGGGGA   1   =|||||||**|||||||||||||| targets:1   UAAACCAGCCUGUUUGCAGCCCCU   24 Target Full Sequence	2.0	Sequence 1475 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020545800.1	ncRNA:24   GUUUGGUCUCACAAACGUCGGGGA   1   ||||||||=**||||||||||||| targets:862   CAAACCAGGCCGUUUGCAGCCCCU   885 Target Full Sequence	3.0	PREDICTED: Zea mays embryo sac development arrest 6 (LOC103641842), mRNA	NA	coding protein	psRNATarget
EU968721.1	ncRNA:24   GUUUGGUCUCACAAACGUCGGGGA   1   **|=|||||*|||||||||||=|| targets:920   GCAGCCAGACUGUUUGCAGCCUCU   943 Target Full Sequence	2.5	Zea mays clone 323697 tyrosine specific protein phosphatase family protein mRNA, complete cds	NA	coding protein	psRNATarget