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BaseInfo

ncRNA ID	novel_zma_miR9717
Species	Zea mays
Class	miRNA
Genome position	Chr8:99365848-99365920 [-]
Reference genome	RefGen_v4
Source	SRR4237226
Length	24
Mature sequence(if miRNA)	1 - GGCACUCGGCAAAGAGCUCUUUAC - 24
Stem-loop(if miRNA)	--AUUU                  ---------      UU       GGCUCUUUGCCGAGUGUC         AUAUUC  U       ||||||||||||||||||         ||||||       UCGAGAAACGGCUCACGG         UGUGAG  G CAUUUC                  GCUUUAUUU      CC
Stem-loop sequence	AUUUGGCUCUUUGCCGAGUGUCAUAUUCUUUGCCGAGUGUUUUAUUUCGGGCACUCGGCAAAGAGCUCUUUAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020543430.1	ncRNA:24   CAUUUCUCGAGAAACGGCUCACGG   1   |*|||||||||||||||||||||| targets:1169   GCAAAGAGCUCUUUGCCGAGUGCC   1192 Target Full Sequence	0.0	PREDICTED: Zea mays protein enabled homolog (LOC103636633), mRNA	NA	coding protein	psRNATarget
JB167154.1	ncRNA:24   CAUUUCUCGAGAAACGGCUCACGG   1   |*||||||||||||||||||||=| targets:60   GCAAAGAGCUCUUUGCCGAGUGUC   83 Target Full Sequence	1.5	Sequence 4818 from Patent EP2559767	NA	coding protein	psRNATarget
JB167154.1	ncRNA:24   CAUUUCUCGAGAAACGGCUCACGG   1   |*||||||||||||||||||||== targets:100   GCAAAGAGCUCUUUGCCGAGUGUU   123 Target Full Sequence	2.5	Sequence 4818 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238823.1	ncRNA:24   CAUUUCUCGAGAAACGGCUCACGG   1   |*||||||||||||||||||||=| targets:60   GCAAAGAGCUCUUUGCCGAGUGUC   83 Target Full Sequence	1.5	Sequence 4818 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238823.1	ncRNA:24   CAUUUCUCGAGAAACGGCUCACGG   1   |*||||||||||||||||||||== targets:100   GCAAAGAGCUCUUUGCCGAGUGUU   123 Target Full Sequence	2.5	Sequence 4818 from Patent EP2985353	NA	coding protein	psRNATarget
HI406693.1	ncRNA:24   CAUUUCUCGAGAAACGGCUCACGG   1   |*||||||||||||||||||||=| targets:60   GCAAAGAGCUCUUUGCCGAGUGUC   83 Target Full Sequence	1.5	Sequence 4818 from Patent EP2074227	NA	coding protein	psRNATarget
HI406693.1	ncRNA:24   CAUUUCUCGAGAAACGGCUCACGG   1   |*||||||||||||||||||||== targets:100   GCAAAGAGCUCUUUGCCGAGUGUU   123 Target Full Sequence	2.5	Sequence 4818 from Patent EP2074227	NA	coding protein	psRNATarget
NM_001152461.1	ncRNA:24   CAUUUCUCGAGAAACGGCUCACGG   1   |*||||||||||||||||||||== targets:1980   GCAAAGAGCUCUUUGCCGAGUGUU   2003 Target Full Sequence	2.5	Zea mays uncharacterized LOC100279456 (IDP836), mRNA	NA	coding protein	psRNATarget
BT054268.1	ncRNA:24   CAUUUCUCGAGAAACGGCUCACGG   1   |*||||||||||||||||||||== targets:1980   GCAAAGAGCUCUUUGCCGAGUGUU   2003 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0206G23 mRNA, complete cds	NA	coding protein	psRNATarget
BT042352.1	ncRNA:24   CAUUUCU-CGAGAAACGGCUCACGG   1   |*|||||-||||||||||||||||| targets:1254   GCAAAGAAGCUCUUUGCCGAGUGCC   1278 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0207J05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148473.2	ncRNA:24   CAUUUCU-CGAGAAACGGCUCACGG   1   |*|||||-||||||||||||||||| targets:1304   GCAAAGAAGCUCUUUGCCGAGUGCC   1328 Target Full Sequence	2.0	Zea mays Protein CHLORORESPIRATORY REDUCTION 6 chloroplastic (si707021b11), mRNA	NA	coding protein	psRNATarget
EU962802.1	ncRNA:24   CAUUUCUCGAGAAACGGCUCACGG   1   ||=**|=*|*|||||||||||||| targets:838   GUGCCGGACGCUUUGCCGAGUGCC   861 Target Full Sequence	3.0	Zea mays clone 245661 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
HI405862.1	ncRNA:24   CAUUUCUCGAGAAACGGCUCACGG   1   |*|||||*||||||||=||||||| targets:1   GCAAAGAACUCUUUGCUGAGUGCC   24 Target Full Sequence	2.5	Sequence 3987 from Patent EP2074227	NA	coding protein	psRNATarget
LQ237992.1	ncRNA:24   CAUUUCUCGAGAAACGGCUCACGG   1   |*|||||*||||||||=||||||| targets:1   GCAAAGAACUCUUUGCUGAGUGCC   24 Target Full Sequence	2.5	Sequence 3987 from Patent EP2985353	NA	coding protein	psRNATarget
JB166323.1	ncRNA:24   CAUUUCUCGAGAAACGGCUCACGG   1   |*|||||*||||||||=||||||| targets:1   GCAAAGAACUCUUUGCUGAGUGCC   24 Target Full Sequence	2.5	Sequence 3987 from Patent EP2559767	NA	coding protein	psRNATarget
NM_001138759.1	ncRNA:24   CAUUUCUCGAGAAACGGCUCACGG   1   |*||=|||=||||*|||||||||| targets:512   GCAAGGAGUUCUUCGCCGAGUGCC   535 Target Full Sequence	2.5	Zea mays uncharacterized LOC100193666 (LOC100193666), mRNA	NA	coding protein	psRNATarget
BT035994.1	ncRNA:24   CAUUUCUCGAGAAACGGCUCACGG   1   |*||=|||=||||*|||||||||| targets:512   GCAAGGAGUUCUUCGCCGAGUGCC   535 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0091D11 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008649188.2	ncRNA:24   CAUUUCUCGAGAAACGGCUCACGG   1   |*||=|||=||||*|||||||||| targets:1027   GCAAGGAGUUCUUCGCCGAGUGCC   1050 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100193666 (LOC100193666), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020538798.1	ncRNA:24   CAUUUCUCGAGAAACGGCUCACGG   1   |*||=|||=||||*|||||||||| targets:1011   GCAAGGAGUUCUUCGCCGAGUGCC   1034 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100193666 (LOC100193666), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008654495.2	ncRNA:24   CAUUUCUCGAGAAACGGCUCACGG   1   |*||||**=||||||||||||||| targets:8   GCAAAGCCUUCUUUGCCGAGUGCC   31 Target Full Sequence	3.0	PREDICTED: Zea mays probable GMP synthase [glutamine-hydrolyzing] (LOC103632764), mRNA	NA	coding protein	psRNATarget
EZ087925.1	ncRNA:24   CAUUUCUCGAGAAACGGCUCACGG   1   ||=**|=*=||||||||||||||| targets:46   GUGUUGGCUUCUUUGCCGAGUGCC   69 Target Full Sequence	3.0	TSA: Zea mays contig23571, mRNA sequence	NA	coding protein	psRNATarget