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BaseInfo

ncRNA ID novel_zma_miR9712
Species Zea mays
Class miRNA
Genome position Chr1:228675375-228675476 [+]
Reference genome RefGen_v4
Source SRR4237226
Length 24
Mature sequence(if miRNA) 79 - AACCGUCGAACUUAACUCAUUAGG - 102
Stem-loop(if miRNA) -UAC             -    G      UAAAAACA    UAC     UU    
    AUGAGUUAAGUUC AUGG UUUGGU        UGGG   CCACG  CUUAA
    ||||||||||||| |||| ||||||        ||||   |||||  ||||A
    UACUCAAUUCAAG UGCC AAACCG        ACCC   GGUGU  GAAUU
GGAU             C    A      --------    -CU     UU    
Stem-loop sequence UACAUGAGUUAAGUUCAUGGGUUUGGUUAAAAACAUGGGUACCCACGUUCUUAAAUUAAGUUUGUGGUCCCCAGCCAAAACCGUCGAACUUAACUCAUUAGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008666676.2
ncRNA:24   GGAUUACUCAAUUCAAGCUGCCAA   1
  ||||||*=||||||||||||||||
targets:713   CCUAAUAGGUUAAGUUCGACGGUU   736

2.0 PREDICTED: Zea mays uncharacterized LOC103643487 (LOC103643487), mRNA NA coding protein psRNATarget
BT055929.2
ncRNA:24   GGAUUACUCAAUUCAAGCUGCCAA   1
  ||||||*=||||||||||||||||
targets:1956   CCUAAUAGGUUAAGUUCGACGGUU   1979

2.0 Zea mays full-length cDNA clone ZM_BFc0045N06 mRNA, complete cds NA coding protein psRNATarget
BT066569.2
ncRNA:24   GGAUUACUCAAUUCAAGCUGCCAA   1
  ||||||*=||||||||||||||||
targets:1972   CCUAAUAGGUUAAGUUCGACGGUU   1995

2.0 Zea mays full-length cDNA clone ZM_BFb0031A06 mRNA, complete cds NA coding protein psRNATarget