Search result

BaseInfo

ncRNA ID	novel_zma_miR9709
Species	Zea mays
Class	miRNA
Genome position	Chr8:172131609-172131740 [+]
Reference genome	RefGen_v4
Source	SRR4237226
Length	24
Mature sequence(if miRNA)	1 - AAACCAGAAUGUUUGCAGCCCCUC - 24
Stem-loop(if miRNA)	--               C        U            AAGAC           --CA    AAAC   AAACCAGAAUGUUUG AGCCCCUC CAAAAAGAAGGA     CUUACCUGCAG    AUUA    G   ||||||||||||||| |||||||| ||||||||||||     |||||||||||    ||||   UUUGGUCUUACAAAC UCGGGGAG GUUUUUCUUCUU     GGGUGGACGUC    UAGU    U CG               A        U            AUAUA           CAAA    CCAU
Stem-loop sequence	AAACCAGAAUGUUUGCAGCCCCUCUCAAAAAGAAGGAAAGACCUUACCUGCAGCAAUUAAAACGUUACCUGAUAAACCUGCAGGUGGGAUAUAUUCUUCUUUUUGUGAGGGGCUACAAACAUUCUGGUUUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235552.1	ncRNA:24   CUCCCCGACGUUUGUAAGACCAAA   1   |||||||||||||||*|||||||| targets:112   GAGGGGCUGCAAACAGUCUGGUUU   135 Target Full Sequence	1.5	Sequence 1547 from Patent EP2985353	NA	coding protein	psRNATarget
JB163883.1	ncRNA:24   CUCCCCGACGUUUGUAAGACCAAA   1   |||||||||||||||*|||||||| targets:112   GAGGGGCUGCAAACAGUCUGGUUU   135 Target Full Sequence	1.5	Sequence 1547 from Patent EP2559767	NA	coding protein	psRNATarget
HI403422.1	ncRNA:24   CUCCCCGACGUUUGUAAGACCAAA   1   |||||||||||||||*|||||||| targets:112   GAGGGGCUGCAAACAGUCUGGUUU   135 Target Full Sequence	1.5	Sequence 1547 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020547635.1	ncRNA:24   CUCCCCGACGUUUGUAAGACCAAA   1   |||||||||||||||*|||||||| targets:2554   GAGGGGCUGCAAACACUCUGGUUU   2577 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X7, mRNA	NA	coding protein	psRNATarget
AY111544.1	ncRNA:24   CUCCCCGACGUUUGUAAGACCAAA   1   |||||||||||||||*|||||||| targets:978   GAGGGGCUGCAAACACUCUGGUUU   1001 Target Full Sequence	1.5	Zea mays CL947_1 mRNA sequence	NA	coding protein	psRNATarget
X55314.1	ncRNA:24   CUCCCCGACGUUUGUAAGACCAAA   1   |||||||||||||||*|||||||| targets:1022   GAGGGGCUGCAAACACUCUGGUUU   1045 Target Full Sequence	1.5	Zea mays A2 gene	NA	coding protein	psRNATarget
XM_020547631.1	ncRNA:24   CUCCCCGACGUUUGUAAGACCAAA   1   |||||||||||||||*|||||||| targets:3454   GAGGGGCUGCAAACACUCUGGUUU   3477 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020547630.1	ncRNA:24   CUCCCCGACGUUUGUAAGACCAAA   1   |||||||||||||||*|||||||| targets:3471   GAGGGGCUGCAAACACUCUGGUUU   3494 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020547634.1	ncRNA:24   CUCCCCGACGUUUGUAAGACCAAA   1   |||||||||||||||*|||||||| targets:4329   GAGGGGCUGCAAACACUCUGGUUU   4352 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_020547633.1	ncRNA:24   CUCCCCGACGUUUGUAAGACCAAA   1   |||||||||||||||*|||||||| targets:4332   GAGGGGCUGCAAACACUCUGGUUU   4355 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020547632.1	ncRNA:24   CUCCCCGACGUUUGUAAGACCAAA   1   |||||||||||||||*|||||||| targets:4350   GAGGGGCUGCAAACACUCUGGUUU   4373 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020547629.1	ncRNA:24   CUCCCCGACGUUUGUAAGACCAAA   1   |||||||||||||||*|||||||| targets:4352   GAGGGGCUGCAAACACUCUGGUUU   4375 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008657979.2	ncRNA:24   CUCCCCGACGUUUGUAAGACCAAA   1   |||*|||||||||||||=|||||| targets:1484   GAGAGGCUGCAAACAUUUUGGUUU   1507 Target Full Sequence	1.5	PREDICTED: Zea mays annexin-like protein RJ4 (LOC103635552), mRNA	NA	coding protein	psRNATarget
EU968721.1	ncRNA:24   CUCCCCGACGUUUGUAAGACCAAA   1   ||||||||*||||||*|||||||| targets:1038   GAGGGGCUACAAACAGUCUGGUUU   1061 Target Full Sequence	2.5	Zea mays clone 323697 tyrosine specific protein phosphatase family protein mRNA, complete cds	NA	coding protein	psRNATarget