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BaseInfo

ncRNA ID	novel_zma_miR9705
Species	Zea mays
Class	miRNA
Genome position	Chr7:3858285-3858409 [+]
Reference genome	RefGen_v4
Source	SRR4237226
Length	24
Mature sequence(if miRNA)	102 - ACGGACCGUCCGCGCCUGUGCAGA - 125
Stem-loop(if miRNA)	--      C        C    --    CC    G     C   --     GUCAG      AAC   UGCACA GCGCGGAC GUCC  GGCC  GGGC CGGAC GUC  CGGCC     GCAGGG   G   |||||| |||||||| ||||  ||||  |||| ||||| |||  |||||     ||||||   C   ACGUGU CGCGCCUG CAGG  CCGG  CCCG GCCUG CAG  GCUGG     UGUCCC   C AG      C        C    CA    UC    -     C   AC     -ACCA      CGA
Stem-loop sequence	UGCACACGCGCGGACCGUCCGGCCCCGGGCGCGGACCGUCCGGCCGUCAGGCAGGGAACGCCAGCCCCUGUACCAGGUCGCAGACCGUCCGGCCCCUGGCCACGGACCGUCCGCGCCUGUGCAGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU970066.1	ncRNA:24   AGACGUGUCCGCGCCUGCCAGGCA   1   ||||||||||*||||||||||||* targets:825   UCUGCACAGGGGCGGACGGUCCGC   848 Target Full Sequence	2.0	Zea mays clone 339328 mRNA sequence	NA	coding protein	psRNATarget
EU957504.1	ncRNA:24   AGACGUGUCCGCGCCUGCCAGGCA   1   *|||||*||||||||||||||||| targets:1859   GCUGCAGAGGCGCGGACGGUCCGU   1882 Target Full Sequence	1.0	Zea mays clone 1595644 transferase mRNA, complete cds	NA	coding protein	psRNATarget
JB170591.1	ncRNA:24   AGACGUGUCCGCGCCUGCCAGGCA   1   |||||=*||||||||||||||||* targets:9   UCUGCGGAGGCGCGGACGGUCCGC   32 Target Full Sequence	3.0	Sequence 8255 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242260.1	ncRNA:24   AGACGUGUCCGCGCCUGCCAGGCA   1   |||||=*||||||||||||||||* targets:9   UCUGCGGAGGCGCGGACGGUCCGC   32 Target Full Sequence	3.0	Sequence 8255 from Patent EP2985353	NA	coding protein	psRNATarget
HI410130.1	ncRNA:24   AGACGUGUCCGCGCCUGCCAGGCA   1   |||||=*||||||||||||||||* targets:9   UCUGCGGAGGCGCGGACGGUCCGC   32 Target Full Sequence	3.0	Sequence 8255 from Patent EP2074227	NA	coding protein	psRNATarget
JB169392.1	ncRNA:24   AG---ACGUGUCCGCGCCUGCCAGGCA   1   ||---||=*|||||||||||||||||| targets:29   UCCGGUGUCCAGGCGCGGACGGUCCGU   55 Target Full Sequence	1.0	Sequence 7056 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241061.1	ncRNA:24   AG---ACGUGUCCGCGCCUGCCAGGCA   1   ||---||=*|||||||||||||||||| targets:29   UCCGGUGUCCAGGCGCGGACGGUCCGU   55 Target Full Sequence	1.0	Sequence 7056 from Patent EP2985353	NA	coding protein	psRNATarget
HI408931.1	ncRNA:24   AG---ACGUGUCCGCGCCUGCCAGGCA   1   ||---||=*|||||||||||||||||| targets:29   UCCGGUGUCCAGGCGCGGACGGUCCGU   55 Target Full Sequence	1.0	Sequence 7056 from Patent EP2074227	NA	coding protein	psRNATarget
EU971146.1	ncRNA:24   AGACGUGUCCGCGCCUGCCAGGCA   1   |||*|=*||||||||||||||||| targets:318   UCUUCGGAGGCGCGGACGGUCCGU   341 Target Full Sequence	2.0	Zea mays clone 358377 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT061906.1	ncRNA:24   AGACGUGUCCGCGCCUGCCAGGCA   1   ||||**|||||||||||||||||* targets:182   UCUGGUCAGGCGCGGACGGUCCGC   205 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0196M13 mRNA, complete cds	NA	coding protein	psRNATarget
EU968855.1	ncRNA:24   AGACGUGUCCGCGCCUGCCAGGCA   1   ||||**|||||||||||||||||* targets:619   UCUGGUCAGGCGCGGACGGUCCGC   642 Target Full Sequence	2.0	Zea mays clone 324570 mRNA sequence	NA	coding protein	psRNATarget
EU968855.1	ncRNA:24   AGACGUGUCCGCGCCUGCCAGGCA   1   ||||**|||*|||||||||||||* targets:690   UCUGGUCAGACGCGGACGGUCCGC   713 Target Full Sequence	3.0	Zea mays clone 324570 mRNA sequence	NA	coding protein	psRNATarget
BT034345.1	ncRNA:24   AGACGUGUCCGCGCCUGCCAGGCA   1   ||||**|||||||||||||||||* targets:654   UCUGGUCAGGCGCGGACGGUCCGC   677 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0009F02 mRNA, complete cds	NA	coding protein	psRNATarget
BT034345.1	ncRNA:24   AGAC---GUGUCCGCGCCUGCCAGGCA   1   ||*|---|||||||||||||*|||||* targets:739   UCCGGCCCACAGGCGCGGACCGUCCGG   765 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0009F02 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175289.1	ncRNA:24   AGACGUGUCCGCGCCUGCCAGGCA   1   ||||**|||||||||||||||||* targets:1672   UCUGGUCAGGCGCGGACGGUCCGC   1695 Target Full Sequence	2.0	Zea mays uncharacterized LOC100382557 (LOC100382557), mRNA	NA	coding protein	psRNATarget
BT064749.1	ncRNA:24   AGACGUGUCCGCGCCUGCCAGGCA   1   ||||**|||||||||||||||||* targets:1672   UCUGGUCAGGCGCGGACGGUCCGC   1695 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0101G18 mRNA, complete cds	NA	coding protein	psRNATarget
EZ049111.1	ncRNA:24   AGACGUGUCCGCGCCUGCCAGGCA   1   ||||**||||=||||||||||||* targets:15   UCUGGUCAGGUGCGGACGGUCCGC   38 Target Full Sequence	3.0	TSA: Zea mays contig50229, mRNA sequence	NA	coding protein	psRNATarget
EU940813.1	ncRNA:24   AGACGUGUCCGCGCCUGCCAGGCA   1   ****|||||||||||||*|||||* targets:51   GGCCCACAGGCGCGGACCGUCCGG   74 Target Full Sequence	2.5	Zea mays clone 1145688 mRNA sequence	NA	coding protein	psRNATarget
XM_008676947.2	ncRNA:24   AGACGUGUC-CGCGCCUGCCAGGCA   1   ||**|=|||-||||||||||||||| targets:889   UCGCCGCAGUGCGCGGACGGUCCGU   913 Target Full Sequence	3.0	PREDICTED: Zea mays MAP7 domain-containing protein 1 (LOC103651325), mRNA	NA	coding protein	psRNATarget
EZ059430.1	ncRNA:24   AGACGUGUCCGCGCCUGCCAGGCA   1   ****|||||||||||||*|||||* targets:38   GGCCCACAGGCGCGGACCGUCCGG   61 Target Full Sequence	2.5	TSA: Zea mays contig60552, mRNA sequence	NA	coding protein	psRNATarget