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BaseInfo

ncRNA ID	novel_zma_miR9693
Species	Zea mays
Class	miRNA
Genome position	Chr6:144213458-144213590 [+]
Reference genome	RefGen_v4
Source	SRR4237225
Length	23
Mature sequence(if miRNA)	1 - AUUUGGUCUUUGACUCGUGUACC - 23
Stem-loop(if miRNA)	--         UU                    A        ACAA                    U   AUUUGGUCU  GACUCGUGUACCUUCUGCUC UGAUUUCG    CAUAACUCCGUUGUUCUUCU U   |||||||||  |||||||||||||||||||| ||||||||    |||||||||||||||||||| A   UAAACCAGA  CUGAGCACAUGGAAGGCGAG ACUAAAGC    GUAUUGGGGUAACAAGAGGA U AA         --                    C        CUUC                    U
Stem-loop sequence	AUUUGGUCUUUGACUCGUGUACCUUCUGCUCAUGAUUUCGACAACAUAACUCCGUUGUUCUUCUUUAUUAGGAGAACAAUGGGGUUAUGCUUCCGAAAUCACGAGCGGAAGGUACACGAGUCAGACCAAAUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU963346.1	ncRNA:23   CCAUGUGCUCAGUUUCUGGUUUA   1   |||=|||*|||||||||=||||| targets:187   GGUGCACAAGUCAAAGAUCAAAU   209 Target Full Sequence	2.5	Zea mays clone 261216 nudix hydrolase 23 mRNA, complete cds	NA	coding protein	psRNATarget
BT062317.1	ncRNA:23   CCAUGUGCUCAGUUUCUGGUUUA   1   |||=|||*|||||||||=||||| targets:241   GGUGCACAAGUCAAAGAUCAAAU   263 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0279G13 mRNA, complete cds	NA	coding protein	psRNATarget
BT033388.1	ncRNA:23   CCAUGUGCUCAGUUUCUGGUUUA   1   |||=|||*|||||||||=||||| targets:338   GGUGCACAAGUCAAAGAUCAAAU   360 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0044B21 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008652633.2	ncRNA:23   CCAUGUGCUCAGUUUCUGGUUUA   1   |||=|||*|||||||||=||||| targets:333   GGUGCACAAGUCAAAGAUCAAAU   355 Target Full Sequence	2.5	PREDICTED: Zea mays nudix hydrolase 23 (LOC100192798), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT034879.1	ncRNA:23   CCAUGUGCUCAGUUUCUGGUUUA   1   |||=|||*|||||||||=||||| targets:284   GGUGCACAAGUCAAAGAUCAAAU   306 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0025G02 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137991.1	ncRNA:23   CCAUGUGCUCAGUUUCUGGUUUA   1   |||=|||*|||||||||=||||| targets:284   GGUGCACAAGUCAAAGAUCAAAU   306 Target Full Sequence	2.5	Zea mays nudix hydrolase 23 (LOC100192798), mRNA	NA	coding protein	psRNATarget
XM_020540298.1	ncRNA:23   CCAUGUGCUCAGUUUCUGGUUUA   1   *||=|||*|||||||||=||||| targets:188   CGUGCACAAGUCAAAGAUCAAAU   210 Target Full Sequence	2.5	PREDICTED: Zea mays nudix hydrolase 23 (LOC100192798), transcript variant X2, mRNA	NA	coding protein	psRNATarget