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BaseInfo

ncRNA ID novel_zma_miR9690
Species Zea mays
Class miRNA
Genome position Chr1:201201026-201201199 [+]
Reference genome RefGen_v4
Source SRR4237225
Length 24
Mature sequence(if miRNA) 151 - AUUAGUCCGCAGAAACCAAACACC - 174
Stem-loop(if miRNA) --     A      -A A       U      CU  UUAUUU                   C C              CA    CAAAAAU
  UGUUU GUUUCU  G GACUAAU UUUAGU  CU      UAUUUUAUUUUAUUUUAGU U UAAAUUAUUAAAUA  GAAA       A
  ||||| ||||||  | ||||||| ||||||  ||      ||||||||||||||||||| | ||||||||||||||  ||||
  ACAAA CAAAGA  C CUGAUUA AAAUCA  GA      GUAAAAUAAGAUAAAAUUA A AUUUAAUAAUUUAU  CUUU       G
CC     C      CG -       U      AG  -----U                   U A              -A    UAAUUGA
Stem-loop sequence UGUUUAGUUUCUAGAGACUAAUUUUUAGUCUCUUUAUUUUAUUUUAUUUUAUUUUAGUCUCUAAAUUAUUAAAUACAGAAACAAAAAUAGAGUUAAUUUUCAUAUUUAAUAAUUUAAAUAUUAAAAUAGAAUAAAAUGUAGGAACUAAAUAUUAGUCCGCAGAAACCAAACACC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001112512.2
ncRNA:24   CCACAAACCAAAGACGCCUGAUUA   1
  |||||||||||||||=||||||||
targets:1640   GGUGUUUGGUUUCUGUGGACUAAU   1663

1.5 Zea mays Aldose reductase (pco147797a), mRNA NA coding protein psRNATarget