Search result

BaseInfo

ncRNA ID	novel_zma_miR9679
Species	Zea mays
Class	miRNA
Genome position	Chr5:8897772-8897932 [-]
Reference genome	RefGen_v4
Source	SRR4237225
Length	24
Mature sequence(if miRNA)	1 - AAACAUUCUGGUUUGCAGCCGGCU - 24
Stem-loop(if miRNA)	--             U                  --     U           UC       C    ---A  -AC    CAA   CCGGCUGCAAACU GAAUGUUUGCAGCCCCUC  ACAAA AGGAGGAUAGA  CCACCUG AGGU    CA   AACG   U   ||||||||||||| ||||||||||||||||||  ||||| |||||||||||  ||||||| ||||    ||   ||||   U   GGCCGACGUUUGG CUUACAAACGUCGGGGAG  UGUUU UCCUCUUAUCU  GGUGGAC UCCA    GU   UUGC   A UC             U                  AG     U           GA       A    GAUA  CCA    AAA
Stem-loop sequence	CCGGCUGCAAACUUGAAUGUUUGCAGCCCCUCACAAAUAGGAGGAUAGAUCCCACCUGCAGGUACAACAACGCAAUUAAAACGUUACCUGAUAGACCUACAGGUGGAGUCUAUUCUCCUUUUUGUGAGAGGGGCUGCAAACAUUCUGGUUUGCAGCCGGCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001137162.1	ncRNA:24   UCGGCCGACGUUUGGUCUUACAAA   1   ||||*||||||||*|||||||||| targets:2059   AGCCCGCUGCAAAACAGAAUGUUU   2082 Target Full Sequence	1.5	Zea mays uncharacterized LOC100191734 (LOC100191734), mRNA	NA	coding protein	psRNATarget
BT033928.1	ncRNA:24   UCGGCCGACGUUUGGUCUUACAAA   1   ||||*||||||||*|||||||||| targets:2059   AGCCCGCUGCAAAACAGAAUGUUU   2082 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0036M23 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008682759.2	ncRNA:24   UCGGCCGACGUUUGGUCUUACAAA   1   ||||*||||||||*|||||||||| targets:2497   AGCCCGCUGCAAAACAGAAUGUUU   2520 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100191734 (LOC100191734), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008682758.2	ncRNA:24   UCGGCCGACGUUUGGUCUUACAAA   1   ||||*||||||||*|||||||||| targets:2500   AGCCCGCUGCAAAACAGAAUGUUU   2523 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100191734 (LOC100191734), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001151499.1	ncRNA:24   UCGGCCGACGUUUGGUCUUACAAA   1   =|*|*|||||||||||||*||||| targets:661   GGACUGCUGCAAACCAGACUGUUU   684 Target Full Sequence	1.5	Zea mays uncharacterized LOC100278117 (LOC100278117), mRNA	NA	coding protein	psRNATarget
EU972005.1	ncRNA:24   UCGGCCGACGUUUGGUCUUACAAA   1   =|*|*|||||||||||||*||||| targets:661   GGACUGCUGCAAACCAGACUGUUU   684 Target Full Sequence	1.5	Zea mays clone 373333 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget