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BaseInfo

ncRNA ID	novel_zma_miR9671
Species	Zea mays
Class	miRNA
Genome position	Chr4:140077542-140077605 [-]
Reference genome	RefGen_v4
Source	SRR4237225
Length	23
Mature sequence(if miRNA)	1 - UUUAAUCCCCUUCAAUCCCCCUC - 23
Stem-loop(if miRNA)	--                      G    CCU   GGGGGAUUGAAGGGGAUUAAAU CCCU   A   |||||||||||||||||||||| ||||   CCCCCUAACUUCCCCUAAUUUG GGGA   U CU                      G    UCU
Stem-loop sequence	GGGGGAUUGAAGGGGAUUAAAUGCCCUCCUAUUCUAGGGGGUUUAAUCCCCUUCAAUCCCCCUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ059519.1	ncRNA:23   CUCCCCCUAACUUCCCCUAAUUU   1   ||||||||||||||||||||||| targets:436   GAGGGGGAUUGAAGGGGAUUAAA   458 Target Full Sequence	0.0	TSA: Zea mays contig60641, mRNA sequence	NA	coding protein	psRNATarget
XM_020552749.1	ncRNA:23   CUCCCCCUAACUUCCCCUAAUUU   1   |||||||||||=||||||||||| targets:3213   GAGGGGGAUUGGAGGGGAUUAAA   3235 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103654236 (LOC103654236), mRNA	NA	coding protein	psRNATarget
EZ093244.1	ncRNA:23   CUCCCCCUAACUUCCCCUAAUUU   1   ||||*||||||=||||||||||| targets:17   GAGGAGGAUUGGAGGGGAUUAAA   39 Target Full Sequence	2.5	TSA: Zea mays contig28894, mRNA sequence	NA	coding protein	psRNATarget
BT054737.1	ncRNA:23   CUCCCCCUAACUUCCCCUAAUUU   1   ||||*||||||=||||||||||| targets:131   GAGGAGGAUUGGAGGGGAUUAAA   153 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0011M02 mRNA, complete cds	NA	coding protein	psRNATarget
BT085111.1	ncRNA:23   CUCCCCCUAACUUCCCCUAAUUU   1   ||*||||||||=||||||||||| targets:1281   GAAGGGGAUUGGAGGGGAUUAAA   1303 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0292J13 mRNA, complete cds	NA	coding protein	psRNATarget
HI403018.1	ncRNA:23   CUCCC-CCUAACUUCCCCUAAUUU   1   **|||-|||||||||||||||||= targets:13   CCGGGAGGAUUGAAGGGGAUUAAG   36 Target Full Sequence	3.0	Sequence 1143 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235148.1	ncRNA:23   CUCCC-CCUAACUUCCCCUAAUUU   1   **|||-|||||||||||||||||= targets:13   CCGGGAGGAUUGAAGGGGAUUAAG   36 Target Full Sequence	3.0	Sequence 1143 from Patent EP2985353	NA	coding protein	psRNATarget
JB163479.1	ncRNA:23   CUCCC-CCUAACUUCCCCUAAUUU   1   **|||-|||||||||||||||||= targets:13   CCGGGAGGAUUGAAGGGGAUUAAG   36 Target Full Sequence	3.0	Sequence 1143 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235121.1	ncRNA:23   CUCCCCCUAACUUCCCCUAAUUU   1   ||*||*|||||=||||||||||| targets:23   GAAGGAGAUUGGAGGGGAUUAAA   45 Target Full Sequence	2.5	Sequence 1116 from Patent EP2985353	NA	coding protein	psRNATarget
JB163452.1	ncRNA:23   CUCCCCCUAACUUCCCCUAAUUU   1   ||*||*|||||=||||||||||| targets:23   GAAGGAGAUUGGAGGGGAUUAAA   45 Target Full Sequence	2.5	Sequence 1116 from Patent EP2559767	NA	coding protein	psRNATarget
HI402991.1	ncRNA:23   CUCCCCCUAACUUCCCCUAAUUU   1   ||*||*|||||=||||||||||| targets:23   GAAGGAGAUUGGAGGGGAUUAAA   45 Target Full Sequence	2.5	Sequence 1116 from Patent EP2074227	NA	coding protein	psRNATarget
BT041883.1	ncRNA:23   CUCCCCCUAACUUCCCCUAAUUU   1   ||*|*||||||=||||||||||| targets:810   GAAGCGGAUUGGAGGGGAUUAAA   832 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0073E14 mRNA, complete cds	NA	coding protein	psRNATarget
BT068750.1	ncRNA:23   CUCCCCCUAACUUCCCCUAAUUU   1   ||*|*|||||||=|||||||||| targets:75   GAAGUGGAUUGAGGGGGAUUAAA   97 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0377I06 mRNA, complete cds	NA	coding protein	psRNATarget
BT062257.1	ncRNA:23   CUCCCCCUAACUUCCCCUAAUUU   1   ||*|*||||||=||||||||||| targets:1109   GAAGCGGAUUGGAGGGGAUUAAA   1131 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0234J14 mRNA, complete cds	NA	coding protein	psRNATarget
EU975659.1	ncRNA:23   CUCCCCCUAACUUCCCCUAAUUU   1   ||*|*||||||=||||||||||| targets:2138   GAAGCGGAUUGGAGGGGAUUAAA   2160 Target Full Sequence	2.5	Zea mays clone 495563 ankyrin protein kinase-like mRNA, complete cds	NA	coding protein	psRNATarget
NM_001158998.2	ncRNA:23   CUCCCCCUAACUUCCCCUAAUUU   1   ||*|*||||||=||||||||||| targets:2139   GAAGCGGAUUGGAGGGGAUUAAA   2161 Target Full Sequence	2.5	Zea mays Ankyrin protein kinase-like (LOC100279910), mRNA	NA	coding protein	psRNATarget
EU942844.1	ncRNA:23   CUCCCCCUAACUUCCCCUAAUUU   1   ****|||||||||||||||||=| targets:155   CUUUGGGAUUGAAGGGGAUUAGA   177 Target Full Sequence	1.5	Zea mays clone 1540330 mRNA sequence	NA	coding protein	psRNATarget
EU947467.1	ncRNA:23   CUCCCCCUAACUUCCCCUAAUUU   1   *|***|||||||=|||||||||| targets:1231   CAUAUGGAUUGAGGGGGAUUAAA   1253 Target Full Sequence	2.5	Zea mays clone 343885 mRNA sequence	NA	coding protein	psRNATarget
NM_001323405.1	ncRNA:23   CUCCCCCUAACUUCCCCUAAUUU   1   *|***|||||||=|||||||||| targets:1934   CAUAUGGAUUGAGGGGGAUUAAA   1956 Target Full Sequence	2.5	Zea mays SKP1-interacting partner 15-like (LOC103648491), transcript variant 1, mRNA	NA	coding protein	psRNATarget
EU943240.1	ncRNA:23   CUCCCCCUAACUUCCCCUAAUUU   1   *=**||||||||||*|||||||| targets:493   AGAAGGGAUUGAAGUGGAUUAAA   515 Target Full Sequence	1.5	Zea mays clone 1589496 mRNA sequence	NA	coding protein	psRNATarget