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BaseInfo

ncRNA ID	novel_zma_miR9666
Species	Zea mays
Class	miRNA
Genome position	Chr10:96940219-96940355 [+]
Reference genome	RefGen_v4
Source	SRR4237225;SRR4237227
Length	24
Mature sequence(if miRNA)	114 - AACGGGAUUAACCGAACAAGCCCU - 137
Stem-loop(if miRNA)	--               C    --A     UG       AG GA     --------AGU   UUUAAAUCCCGA   GGCUUGUUCGGUUAG UCUC   AUCCA  UGGAUUG  U  GAUUG           GGG            G   ||||||||||||||| ||||   |||||  |||||||  |  |||||           |||   CCGAACAAGCCAAUU AGGG   UGGGU  ACCUAAC  A  CUAAC           CUU            U UC               -    CAA     --       CU AC     CUUUUUAAAUU   CUUCAAACUGAA
Stem-loop sequence	GGCUUGUUCGGUUAGCUCUCAAUCCAUGUGGAUUGAGUGAGAUUGAGUGGGUUUAAAUCCCGAGUAAGUCAAACUUCUUCUUAAAUUUUUCCAAUCCAAUCCAAUCCAUGGGUAACGGGAUUAACCGAACAAGCCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ064093.1	ncRNA:24   UCCCGAACAAGCCAAUUAGGGCAA   1   |||*|||||||||||||||||||| targets:100   AGGCCUUGUUCGGUUAAUCCCGUU   123 Target Full Sequence	0.0	TSA: Zea mays contig65216, mRNA sequence	NA	coding protein	psRNATarget
BT086633.1	ncRNA:24   UCCCGAACAAGCCAAUUAGGGCAA   1   |||*|||||||||||||||||||| targets:367   AGGCCUUGUUCGGUUAAUCCCGUU   390 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFa0068P14 mRNA, complete cds	NA	coding protein	psRNATarget
BT063416.1	ncRNA:24   UCCCGAACAAGCCAAUUAGGGCAA   1   |||*|||||||||||||||||||| targets:1992   AGGCCUUGUUCGGUUAAUCCCGUU   2015 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0061L20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154362.2	ncRNA:24   UCCCGAACAAGCCAAUUAGGGCAA   1   |||*|||||||||||||||||||| targets:2064   AGGCCUUGUUCGGUUAAUCCCGUU   2087 Target Full Sequence	0.0	Zea mays protein kinase domain containing protein (LOC100281444), mRNA	NA	coding protein	psRNATarget
EU956718.1	ncRNA:24   UCCCGAACAAGCCAAUUAGGGCAA   1   |||*|||||||||||||||||||| targets:2065   AGGCCUUGUUCGGUUAAUCCCGUU   2088 Target Full Sequence	0.0	Zea mays clone 1571610 protein kinase domain containing protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008674604.2	ncRNA:24   UCCCGAACAAGCCAAUUAGGGCAA   1   |||*|||||||||||||||||||| targets:2193   AGGCCUUGUUCGGUUAAUCCCGUU   2216 Target Full Sequence	0.0	PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020549704.1	ncRNA:24   UCCCGAACAAGCCAAUUAGGGCAA   1   |||*|||||||||||||||||||| targets:2200   AGGCCUUGUUCGGUUAAUCCCGUU   2223 Target Full Sequence	0.0	PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020549703.1	ncRNA:24   UCCCGAACAAGCCAAUUAGGGCAA   1   |||*|||||||||||||||||||| targets:2260   AGGCCUUGUUCGGUUAAUCCCGUU   2283 Target Full Sequence	0.0	PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU962625.1	ncRNA:24   UCCCGAACAAGCCAAUUAGGGCAA   1   |||*||||||||||||||||=||| targets:519   AGGCCUUGUUCGGUUAAUCCUGUU   542 Target Full Sequence	1.5	Zea mays clone 244290 mRNA sequence	NA	coding protein	psRNATarget
XM_008672285.2	ncRNA:24   UCCCGAACAAGCCAAUUAGGGCAA   1   |||*=|||||||||||||||=||| targets:1056   AGGCUUUGUUCGGUUAAUCCUGUU   1079 Target Full Sequence	1.5	PREDICTED: Zea mays 5-formyltetrahydrofolate cyclo-ligase, mitochondrial (LOC103647771), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008672284.2	ncRNA:24   UCCCGAACAAGCCAAUUAGGGCAA   1   |||*=|||||||||||||||=||| targets:1114   AGGCUUUGUUCGGUUAAUCCUGUU   1137 Target Full Sequence	1.5	PREDICTED: Zea mays 5-formyltetrahydrofolate cyclo-ligase, mitochondrial (LOC103647771), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008671671.2	ncRNA:24   UCCCGAACAAGCCAAUUAGGGCAA   1   ||**|||||||||||||||||||| targets:1518   AGACCUUGUUCGGUUAAUCCCGUU   1541 Target Full Sequence	0.0	PREDICTED: Zea mays cytochrome c-type biogenesis ccda-like chloroplastic protein 2 (LOC103647117), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008671669.2	ncRNA:24   UCCCGAACAAGCCAAUUAGGGCAA   1   ||**|||||||||||||||||||| targets:1542   AGACCUUGUUCGGUUAAUCCCGUU   1565 Target Full Sequence	0.0	PREDICTED: Zea mays cytochrome c-type biogenesis ccda-like chloroplastic protein 2 (LOC103647117), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008671670.2	ncRNA:24   UCCCGAACAAGCCAAUUAGGGCAA   1   ||**|||||||||||||||||||| targets:1589   AGACCUUGUUCGGUUAAUCCCGUU   1612 Target Full Sequence	0.0	PREDICTED: Zea mays cytochrome c-type biogenesis ccda-like chloroplastic protein 2 (LOC103647117), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008671674.2	ncRNA:24   UCCCGAACAAGCCAAUUAGGGCAA   1   ||**|||||||||||||||||||| targets:1674   AGACCUUGUUCGGUUAAUCCCGUU   1697 Target Full Sequence	0.0	PREDICTED: Zea mays cytochrome c-type biogenesis ccda-like chloroplastic protein 2 (LOC103647117), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020542014.1	ncRNA:24   UCCCGAACAAGCCAAUUAGGGCAA   1   |||*=||||||*|||||||||||| targets:87   AGGUUUUGUUCAGUUAAUCCCGUU   110 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100277104 (LOC100277104), transcript variant X1, mRNA	NA	coding protein	psRNATarget