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BaseInfo

ncRNA ID	novel_zma_miR9663
Species	Zea mays
Class	miRNA
Genome position	Chr3:4486120-4486233 [+]
Reference genome	RefGen_v4
Source	SRR4237225
Length	21
Mature sequence(if miRNA)	94 - UCUGGAUUAGUGUAACCGAAC - 114
Stem-loop(if miRNA)	-- UA       C                     A U       CU        CAU   U  GUUACAC AAUCCAGAAGAGGAUUGAAGG G UUAAAUU  CUUCUAGU   U   |  ||||||| ||||||||||||||||||||| | |||||||  ||||||||   A  CAAUGUG UUAGGUCUUUUCCUAACUUCC C AAUUUAG  GAAGAUUA   U CA GC       A                     C U       AG        UUU
Stem-loop sequence	UUAGUUACACCAAUCCAGAAGAGGAUUGAAGGAGUUUAAAUUCUCUUCUAGUCAUUUUUUAUUAGAAGGAGAUUUAAUCCCCUUCAAUCCUUUUCUGGAUUAGUGUAACCGAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ095217.1	ncRNA:21   CAAGCCAAUGUGAUUAGGUCU   1   ||||||||||||*|||||||| targets:42   GUUCGGUUACACCAAUCCAGA   62 Target Full Sequence	1.5	TSA: Zea mays contig30870, mRNA sequence	NA	coding protein	psRNATarget
XM_020542872.1	ncRNA:21   CAAGCCAAUGUGAUUAGGUCU   1   ||||||||||||*|||||||| targets:1273   GUUCGGUUACACCAAUCCAGA   1293 Target Full Sequence	1.5	PREDICTED: Zea mays LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.3 (LOC103634808), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT060810.1	ncRNA:21   CAAGCCAAUGUGAUUAGGUCU   1   ||||||||||||*|||||||| targets:1492   GUUCGGUUACACCAAUCCAGA   1512 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0053C16 mRNA, complete cds	NA	coding protein	psRNATarget
BT042688.1	ncRNA:21   CAAGCCAAUGUGAUUAGGUCU   1   ||||||||||||*|||||||| targets:1593   GUUCGGUUACACCAAUCCAGA   1613 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0008P01 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148650.1	ncRNA:21   CAAGCCAAUGUGAUUAGGUCU   1   ||||||||||||*|||||||| targets:1593   GUUCGGUUACACCAAUCCAGA   1613 Target Full Sequence	1.5	Zea mays UDP-glycosyltransferase 75B1 (umc2700), mRNA	NA	coding protein	psRNATarget
EU971133.1	ncRNA:21   CAAGCCAAUGUGAUUAGGUCU   1   ||||||||||||*|||||||| targets:1489   GUUCGGUUACACCAAUCCAGA   1509 Target Full Sequence	1.5	Zea mays clone 358078 mRNA sequence	NA	coding protein	psRNATarget
LQ235158.1	ncRNA:21   CAAGCCAAUGUGAUUAGGUCU   1   |||||*||||||*|||||||| targets:5   GUUCGUUUACACCAAUCCAGA   25 Target Full Sequence	2.5	Sequence 1153 from Patent EP2985353	NA	coding protein	psRNATarget
JB163489.1	ncRNA:21   CAAGCCAAUGUGAUUAGGUCU   1   |||||*||||||*|||||||| targets:5   GUUCGUUUACACCAAUCCAGA   25 Target Full Sequence	2.5	Sequence 1153 from Patent EP2559767	NA	coding protein	psRNATarget
HI403028.1	ncRNA:21   CAAGCCAAUGUGAUUAGGUCU   1   |||||*||||||*|||||||| targets:5   GUUCGUUUACACCAAUCCAGA   25 Target Full Sequence	2.5	Sequence 1153 from Patent EP2074227	NA	coding protein	psRNATarget