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BaseInfo

ncRNA ID novel_zma_miR9662
Species Zea mays
Class miRNA
Genome position Chr3:9730299-9730396 [-]
Reference genome RefGen_v4
Source SRR4237225
Length 24
Mature sequence(if miRNA) 1 - AAGCACUCGGCAAAGAAACUCUUU - 24
Stem-loop(if miRNA) --   AGC               -----AUG      A            A
  AGA   UCUUUGCCGAGUGUU        UAUUUG UACUCAGCAAAG A
  |||   |||||||||||||||        |||||| |||||||||||| G
  UCU   AGAAACGGCUCACGA        GUGAGC GUGAGUCGUUUC C
UU   CAA               AAAAAAUU      A            U
Stem-loop sequence AGAAGCUCUUUGCCGAGUGUUAUGUAUUUGAUACUCAGCAAAGAAGCUCUUUGCUGAGUGACGAGUGUUAAAAAAAGCACUCGGCAAAGAAACUCUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ241915.1
ncRNA:24   UUUCUCAAAGAAACGGCUCACGAA   1
  *=*|||*||||||||||||||||*
targets:75   UGUGAGGUUCUUUGCCGAGUGCUA   98

2.0 Sequence 7910 from Patent EP2985353 NA coding protein psRNATarget
JB170246.1
ncRNA:24   UUUCUCAAAGAAACGGCUCACGAA   1
  *=*|||*||||||||||||||||*
targets:75   UGUGAGGUUCUUUGCCGAGUGCUA   98

2.0 Sequence 7910 from Patent EP2559767 NA coding protein psRNATarget
HI409785.1
ncRNA:24   UUUCUCAAAGAAACGGCUCACGAA   1
  *=*|||*||||||||||||||||*
targets:75   UGUGAGGUUCUUUGCCGAGUGCUA   98

2.0 Sequence 7910 from Patent EP2074227 NA coding protein psRNATarget
EU974507.1
ncRNA:24   UUUCUCAAAGAAACGGCUCACGAA   1
  *||*||*|||||||||||||*|||
targets:440   UAACAGCUUCUUUGCCGAGUACUU   463

2.5 Zea mays clone 451014 hypothetical protein mRNA, complete cds NA coding protein psRNATarget