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BaseInfo

ncRNA ID	novel_zma_miR9660
Species	Zea mays
Class	miRNA
Genome position	Chr3:51886200-51886289 [-]
Reference genome	RefGen_v4
Source	SRR4237225
Length	23
Mature sequence(if miRNA)	1 - CUUUGCCGAGUGUCAUCUGUUGA - 23
Stem-loop(if miRNA)	--     U                  CUU     C      -       AACGG UGGCACUCGGCAAAGAGG   CUUUG CGAGUG CCACA   ||||| ||||||||||||||||||   ||||| |||||| ||||U   UUGUC ACUGUGAGCCGUUUCUCC   GAAAC GCUCAC GGUGA AG     U                  --C     A      A
Stem-loop sequence	AACGGUUGGCACUCGGCAAAGAGGCUUCUUUGCCGAGUGCCACAUAGUGGACACUCGACAAAGCCCUCUUUGCCGAGUGUCAUCUGUUGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU974507.1	ncRNA:23   AGUUGUCUACUGUGAGCCGUUUC   1   ||--=||=||||||||||||||| targets:545   UC--UAGGUGACACUCGGCAAAG   565 Target Full Sequence	2.0	Zea mays clone 451014 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008654495.2	ncRNA:23   AGUUGUCUACUGUGAGCCGUUUC   1   *|=|||*|*|||||||||||||| targets:31   CCGACAAAAGACACUCGGCAAAG   53 Target Full Sequence	2.0	PREDICTED: Zea mays probable GMP synthase [glutamine-hydrolyzing] (LOC103632764), mRNA	NA	coding protein	psRNATarget
BT055423.1	ncRNA:23   AGUUGUCUACUGUGAGCCGUUUC   1   ||||*|*|*|||||||||||||| targets:20   UCAAAAAAAGACACUCGGCAAAG   42 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0179M04 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165647.1	ncRNA:23   AGUUGUCUACUGUGAGCCGUUUC   1   ||||*|*|*|||||||||||||| targets:20   UCAAAAAAAGACACUCGGCAAAG   42 Target Full Sequence	3.0	Zea mays uncharacterized LOC100304195 (LOC100304195), mRNA	NA	coding protein	psRNATarget
NM_001152461.1	ncRNA:23   AGUUGUCUACUGUGAGCCGUUUC   1   ||||*|*|*|||||||||||||| targets:2039   UCAAAAAAAGACACUCGGCAAAG   2061 Target Full Sequence	3.0	Zea mays uncharacterized LOC100279456 (IDP836), mRNA	NA	coding protein	psRNATarget
BT054268.1	ncRNA:23   AGUUGUCUACUGUGAGCCGUUUC   1   ||||*|*|*|||||||||||||| targets:2039   UCAAAAAAAGACACUCGGCAAAG   2061 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0206G23 mRNA, complete cds	NA	coding protein	psRNATarget
EU952231.1	ncRNA:23   AGUUGUCUACUGUGAGCCGUUUC   1   *|=|||*|**||||||||||||| targets:1732   ACGACAAAAAACACUCGGCAAAG   1754 Target Full Sequence	3.0	Zea mays clone 1234152 mRNA sequence	NA	coding protein	psRNATarget