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BaseInfo

ncRNA ID	novel_zma_miR9656
Species	Zea mays
Class	miRNA
Genome position	Chr3:182512953-182513133 [-]
Reference genome	RefGen_v4
Source	SRR4237225
Length	20
Mature sequence(if miRNA)	162 - GAUGUUUGGUUUCUAUGGAC - 181
Stem-loop(if miRNA)	-GA                             UC  UC         UC        U        C     GC  G      AU    AA    UGUUUGGUUUCUAUGGACUAAUUUUUAGU  CU  AUUUUAGUC  UUUUAGUC CUAAAUUG UAAAU  AG ACUAAA  AGAG  A    |||||||||||||||||||||||||||||  ||  |||||||||  |||||||| |||||||| |||||  || ||||||  ||||    ACAAACCAAAGAUACCUGAUUAAAAAUCA  GA  UAAAAUCAG  AAAAUCAG GAUUUAAC GUUUG  UC UGAUUU  UCUC  U CCC                             UA  GA         GA        U        A     UA  A      --    CU
Stem-loop sequence	GAUGUUUGGUUUCUAUGGACUAAUUUUUAGUUCCUUCAUUUUAGUCUCUUUUAGUCUCUAAAUUGCUAAAUGCAGGACUAAAAUAGAGAAAUUCCUCUUUUAGUACUAUGUUUGACAAUUUAGUGACUAAAAAGGACUAAAAUAGAGAUACUAAAAAUUAGUCCAUAGAAACCAAACACCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235174.1	ncRNA:20   CAGGUAUCUUUGGUUUGUAG   1   ||||*||||||||||||||| targets:154   GUCCCUAGAAACCAAACAUC   173 Target Full Sequence	1.0	Sequence 1169 from Patent EP2985353	NA	coding protein	psRNATarget
HI403044.1	ncRNA:20   CAGGUAUCUUUGGUUUGUAG   1   ||||*||||||||||||||| targets:154   GUCCCUAGAAACCAAACAUC   173 Target Full Sequence	1.0	Sequence 1169 from Patent EP2074227	NA	coding protein	psRNATarget
JB163505.1	ncRNA:20   CAGGUAUCUUUGGUUUGUAG   1   ||||*||||||||||||||| targets:154   GUCCCUAGAAACCAAACAUC   173 Target Full Sequence	1.0	Sequence 1169 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008659863.2	ncRNA:20   CAGGUAUCUUUGGUUUGUAG   1   ||=|||||||||||||||*| targets:87   GUUCAUAGAAACCAAACACC   106 Target Full Sequence	2.5	PREDICTED: Zea mays Profilin homolog5 (LOC100193074), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020551154.1	ncRNA:20   CAGGUAUCUUUGGUUUGUAG   1   ||||*|||||||=||||||| targets:663   GUCCCUAGAAACUAAACAUC   682 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103650926 (LOC103650926), mRNA	NA	coding protein	psRNATarget
EZ097506.1	ncRNA:20   CAGGUAUCUUUGGUUUGUAG   1   *|||||*|||=||||||||| targets:9   CUCCAUCGAAGCCAAACAUC   28 Target Full Sequence	2.5	TSA: Zea mays contig33161, mRNA sequence	NA	coding protein	psRNATarget
NM_001152323.1	ncRNA:20   CAGGUAUCUUUGGUUUGUAG   1   ||||*|||||||||||||*| targets:2086   GUCCCUAGAAACCAAACACC   2105 Target Full Sequence	2.5	Zea mays uncharacterized LOC100279302 (LOC100279302), mRNA	NA	coding protein	psRNATarget
BT053999.2	ncRNA:20   CAGGUAUCUUUGGUUUGUAG   1   ||||*|||||||||||||*| targets:2086   GUCCCUAGAAACCAAACACC   2105 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0109O10 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008674147.2	ncRNA:20   CAGGUAUCUUUGGUUUGUAG   1   ||||*|||||||||||||*| targets:29   GUCCCUAGAAACCAAACACC   48 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100272682 (TIDP2766), transcript variant X8, mRNA	NA	coding protein	psRNATarget
XM_020546554.1	ncRNA:20   CAGGUAUCUUUGGUUUGUAG   1   ||||*|||||||||||||*| targets:40   GUCCCUAGAAACCAAACACC   59 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC109943471 (LOC109943471), mRNA	NA	coding protein	psRNATarget
EU967664.1	ncRNA:20   CAGGUAUCUUUGGUUUGUAG   1   ||||*|||||||||||||*| targets:1250   GUCCCUAGAAACCAAACACC   1269 Target Full Sequence	2.5	Zea mays clone 305169 NADH-cytochrome b5 reductase mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156492.1	ncRNA:20   CAGGUAUCUUUGGUUUGUAG   1   ||||*|||||||||||||*| targets:1316   GUCCCUAGAAACCAAACACC   1335 Target Full Sequence	2.5	Zea mays protein COQ10 A (LOC100283591), mRNA	NA	coding protein	psRNATarget
EU965238.1	ncRNA:20   CAGGUAUCUUUGGUUUGUAG   1   ||||*|||||||||||||*| targets:1316   GUCCCUAGAAACCAAACACC   1335 Target Full Sequence	2.5	Zea mays clone 284715 protein COQ10 A mRNA, complete cds	NA	coding protein	psRNATarget
NM_001112602.2	ncRNA:20   CAGGUAUCUUUGGUUUGUAG   1   ||||*|||||||||||||*| targets:1250   GUCCCUAGAAACCAAACACC   1269 Target Full Sequence	2.5	Zea mays ferric-chelate reductase (NADH)2 (fcr2), mRNA	NA	coding protein	psRNATarget
BT065747.2	ncRNA:20   CAGGUAUCUUUGGUUUGUAG   1   ||||*|||||||||||||*| targets:916   GUCCCUAGAAACCAAACACC   935 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0062G24 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020543841.1	ncRNA:20   CAGGUAUCUUUGGUUUGUAG   1   ||||*|||||||||||||*| targets:1071   GUCCCUAGAAACCAAACACC   1090 Target Full Sequence	2.5	PREDICTED: Zea mays lo1 pI allergen homolog 1 (lop1), transcript variant X1, mRNA	NA	coding protein	psRNATarget
LQ235125.1	ncRNA:20   CAGGUAUCUUUGGUUUGUAG   1   ||||*|||||||||||||*| targets:156   GUCCCUAGAAACCAAACACC   175 Target Full Sequence	2.5	Sequence 1120 from Patent EP2985353	NA	coding protein	psRNATarget
HI402995.1	ncRNA:20   CAGGUAUCUUUGGUUUGUAG   1   ||||*|||||||||||||*| targets:156   GUCCCUAGAAACCAAACACC   175 Target Full Sequence	2.5	Sequence 1120 from Patent EP2074227	NA	coding protein	psRNATarget
JB163456.1	ncRNA:20   CAGGUAUCUUUGGUUUGUAG   1   ||||*|||||||||||||*| targets:156   GUCCCUAGAAACCAAACACC   175 Target Full Sequence	2.5	Sequence 1120 from Patent EP2559767	NA	coding protein	psRNATarget
JB163513.1	ncRNA:20   CAGGUAUCUUUGGUUUGUAG   1   ||||*|||||||||||||*| targets:154   GUCCCUAGAAACCAAACACC   173 Target Full Sequence	2.5	Sequence 1177 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235182.1	ncRNA:20   CAGGUAUCUUUGGUUUGUAG   1   ||||*|||||||||||||*| targets:154   GUCCCUAGAAACCAAACACC   173 Target Full Sequence	2.5	Sequence 1177 from Patent EP2985353	NA	coding protein	psRNATarget
HI403052.1	ncRNA:20   CAGGUAUCUUUGGUUUGUAG   1   ||||*|||||||||||||*| targets:154   GUCCCUAGAAACCAAACACC   173 Target Full Sequence	2.5	Sequence 1177 from Patent EP2074227	NA	coding protein	psRNATarget
HI402994.1	ncRNA:20   CAGGUAUCUUUGGUUUGUAG   1   ||||*|||||||||||||*| targets:153   GUCCCUAGAAACCAAACACC   172 Target Full Sequence	2.5	Sequence 1119 from Patent EP2074227	NA	coding protein	psRNATarget
JB163455.1	ncRNA:20   CAGGUAUCUUUGGUUUGUAG   1   ||||*|||||||||||||*| targets:153   GUCCCUAGAAACCAAACACC   172 Target Full Sequence	2.5	Sequence 1119 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235124.1	ncRNA:20   CAGGUAUCUUUGGUUUGUAG   1   ||||*|||||||||||||*| targets:153   GUCCCUAGAAACCAAACACC   172 Target Full Sequence	2.5	Sequence 1119 from Patent EP2985353	NA	coding protein	psRNATarget