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BaseInfo

ncRNA ID novel_zma_miR9625
Species Zea mays
Class miRNA
Genome position Chr1:306908252-306908462 [+]
Reference genome RefGen_v4
Source SRR4237225
Length 22
Mature sequence(if miRNA) 1 - UAAAUAUAUGACGCCGUUGACU - 22
Stem-loop(if miRNA) --             CC         AAAA     U       CA  CAC        A  UAUUUAUUC        AAAACUUCAA     GCUGAAACAACCUUAAGUGA
  UAAAUAUAUGACG  GUUGACUUU    AAAAA CUUUGAC  CU   CUUAUUCA AA         AAAAAUGU          GUCAU                    U
  |||||||||||||  |||||||||    ||||| |||||||  ||   |||||||| ||         ||||||||          |||||                    A
  AUUUAUAUACUGC  CAACUGAAA    UUUUU GAAACUG  GA   GAAUAAGU UU         UUUUUACA          UAGUA                    A
GA             AA         -AAA     -       AC  CCA        C  ---------        -----CUUAA     AAUAAAACGAUACUAAACAA
Stem-loop sequence UAAAUAUAUGACGCCGUUGACUUUAAAAAAAAAUCUUUGACCACUCACCUUAUUCAAAAUAUUUAUUCAAAAAUGUAAAACUUCAAGUCAUGCUGAAACAACCUUAAGUGAUAAAACAAAUCAUAGCAAAAUAAAUGAUAAUUCACAUUUUUUUCUGAAUAAGACCAGCAGUCAAAGUUUUUAAAAAAGUCAACAACGUCAUAUAUUUAAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ235538.1
ncRNA:22   UCAGUUGCCGCAGUAUAUAAAU   1
  |||||||||=||||||||||||
targets:197   AGUCAACGGUGUCAUAUAUUUA   218

1.5 Sequence 1533 from Patent EP2985353 NA coding protein psRNATarget
HI403408.1
ncRNA:22   UCAGUUGCCGCAGUAUAUAAAU   1
  |||||||||=||||||||||||
targets:197   AGUCAACGGUGUCAUAUAUUUA   218

1.5 Sequence 1533 from Patent EP2074227 NA coding protein psRNATarget
JB163869.1
ncRNA:22   UCAGUUGCCGCAGUAUAUAAAU   1
  |||||||||=||||||||||||
targets:197   AGUCAACGGUGUCAUAUAUUUA   218

1.5 Sequence 1533 from Patent EP2559767 NA coding protein psRNATarget
XM_008653624.2
ncRNA:22   UCAGUUGCCGCAGUAUAUAAAU   1
  |||||||||=|||||||||||=
targets:1930   AGUCAACGGUGUCAUAUAUUUG   1951

2.5 PREDICTED: Zea mays histone acetyltransferase 1 (hat1), transcript variant X1, mRNA NA coding protein psRNATarget
HI403404.1
ncRNA:22   UCAGUUGCCGCAGUAUAUAAAU   1
  ||||||||*|||||||||||||
targets:194   AGUCAACGACGUCAUAUAUUUA   215

1.0 Sequence 1529 from Patent EP2074227 NA coding protein psRNATarget
LQ235534.1
ncRNA:22   UCAGUUGCCGCAGUAUAUAAAU   1
  ||||||||*|||||||||||||
targets:194   AGUCAACGACGUCAUAUAUUUA   215

1.0 Sequence 1529 from Patent EP2985353 NA coding protein psRNATarget
JB163865.1
ncRNA:22   UCAGUUGCCGCAGUAUAUAAAU   1
  ||||||||*|||||||||||||
targets:194   AGUCAACGACGUCAUAUAUUUA   215

1.0 Sequence 1529 from Patent EP2559767 NA coding protein psRNATarget
JB163759.1
ncRNA:22   UCAGUUGCCGCAGUAUAUAAAU   1
  |*|||||||=||||||||||||
targets:200   AUUCAACGGUGUCAUAUAUUUA   221

1.5 Sequence 1423 from Patent EP2559767 NA coding protein psRNATarget
HI403298.1
ncRNA:22   UCAGUUGCCGCAGUAUAUAAAU   1
  |*|||||||=||||||||||||
targets:200   AUUCAACGGUGUCAUAUAUUUA   221

1.5 Sequence 1423 from Patent EP2074227 NA coding protein psRNATarget
LQ235428.1
ncRNA:22   UCAGUUGCCGCAGUAUAUAAAU   1
  |*|||||||=||||||||||||
targets:200   AUUCAACGGUGUCAUAUAUUUA   221

1.5 Sequence 1423 from Patent EP2985353 NA coding protein psRNATarget
EU946212.1
ncRNA:22   UCAGUUGCCGCAGUAUAUAAAU   1
  |||||||**|||||||||||||
targets:95   AGUCAACAACGUCAUAUAUUUA   116

2.0 Zea mays clone 300970 mRNA sequence NA coding protein psRNATarget
BT068818.2
ncRNA:22   UCAGUUGCCGCAGUAUAUAAAU   1
  |*|||||*|=||||||||||||
targets:15   AAUCAACUGUGUCAUAUAUUUA   36

2.5 Zea mays full-length cDNA clone ZM_BFc0022H20 mRNA, complete cds NA coding protein psRNATarget
BT017322.1
ncRNA:22   UCAGUUGCCGCAGUAUAUAAAU   1
  |*|||||*|=||||||||||||
targets:816   AAUCAACAGUGUCAUAUAUUUA   837

2.5 Zea mays clone EL01N0319E06.c mRNA sequence NA coding protein psRNATarget
BT017322.1
ncRNA:22   UCAGUUGCCGCAGUAUAUAAAU   1
  |*|||||*|=||||||||||||
targets:863   AAUCAACAGUGUCAUAUAUUUA   884

2.5 Zea mays clone EL01N0319E06.c mRNA sequence NA coding protein psRNATarget
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