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BaseInfo

ncRNA ID	novel_zma_miR9624
Species	Zea mays
Class	miRNA
Genome position	Chr4:26878887-26878950 [-]
Reference genome	RefGen_v4
Source	SRR1997865;SRR1997866
Length	22
Mature sequence(if miRNA)	1 - CAGCAGCAGGCUCACUUGGUAG - 22
Stem-loop(if miRNA)	--     -   C      CUU    C AUCCUCU   GCCAA UGA CCUGCU   GCUG G       A   ||||| ||| ||||||   |||| |   UGGUU ACU GGACGA   CGAC C       G GA     C   C      ---    U AUUCUCA
Stem-loop sequence	GCCAAUGACCCUGCUCUUGCUGCGAUCCUCUAGACUCUUACUCAGCAGCAGGCUCACUUGGUAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI410023.1	ncRNA:22   GAUGGUUCACUCGGACGACGAC   1   =|=||||||||||||||||||| targets:9   UUGCCAAGUGAGCCUGCUGCUG   30 Target Full Sequence	0.0	Sequence 8148 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242153.1	ncRNA:22   GAUGGUUCACUCGGACGACGAC   1   =|=||||||||||||||||||| targets:9   UUGCCAAGUGAGCCUGCUGCUG   30 Target Full Sequence	0.0	Sequence 8148 from Patent EP2985353	NA	coding protein	psRNATarget
JB170484.1	ncRNA:22   GAUGGUUCACUCGGACGACGAC   1   =|=||||||||||||||||||| targets:9   UUGCCAAGUGAGCCUGCUGCUG   30 Target Full Sequence	0.0	Sequence 8148 from Patent EP2559767	NA	coding protein	psRNATarget
EU955895.1	ncRNA:22   GAUGGUUCACUCGGACGACGAC   1   *|=||||||||*|||||||||| targets:1036   GUGCCAAGUGAUCCUGCUGCUG   1057 Target Full Sequence	1.5	Zea mays clone 1550896 mRNA sequence	NA	coding protein	psRNATarget
NM_001154333.2	ncRNA:22   GAUGGUUCACUCGGACGACGAC   1   *|=||||||||*|||||||||| targets:1701   GUGCCAAGUGAUCCUGCUGCUG   1722 Target Full Sequence	1.5	Zea mays heat shock 70 kDa protein 4 (LOC100281415), mRNA	NA	coding protein	psRNATarget
EU956629.1	ncRNA:22   GAUGGUUCACUCGGACGACGAC   1   *|=||||||||*|||||||||| targets:1702   GUGCCAAGUGAUCCUGCUGCUG   1723 Target Full Sequence	1.5	Zea mays clone 1568479 heat shock 70 kDa protein 4 mRNA, complete cds	NA	coding protein	psRNATarget
AY103680.1	ncRNA:22   GAUGGUUCACUCGGACGACGAC   1   **|||||||||*|||||||||| targets:663   GCACCAAGUGAUCCUGCUGCUG   684 Target Full Sequence	1.5	Zea mays PCO080984 mRNA sequence	NA	coding protein	psRNATarget
EZ086627.1	ncRNA:22   GAUGGUUCACUCGGACGACGAC   1   **|***|||||||||||||||| targets:17   GGAAGUAGUGAGCCUGCUGCUG   38 Target Full Sequence	3.0	TSA: Zea mays contig22273, mRNA sequence	NA	coding protein	psRNATarget