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BaseInfo

ncRNA ID	novel_zma_miR9621
Species	Zea mays
Class	miRNA
Genome position	Chr9:135895241-135895308 [+]
Reference genome	RefGen_v4
Source	SRR4237225
Length	21
Mature sequence(if miRNA)	48 - AAUCCCCUUUAAUCCCGAAGG - 68
Stem-loop(if miRNA)	--              A     -   U      GA   UUCGGGAUUGGAGG GAUUG AGG GGAAAU  A   |||||||||||||| ||||| ||| ||||||   AAGCCCUAAUUUCC CUAAC UUC CCUUUA  C GG              C     C   -      AU
Stem-loop sequence	UUCGGGAUUGGAGGAGAUUGAGGUGGAAAUGAACUAAUUUCCCUUCCAAUCCCCUUUAAUCCCGAAGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU941872.1	ncRNA:21   GGAAGCCCUAAUUUCCCCUAA   1   |||||||||||=||||||||| targets:54   CCUUCGGGAUUGAAGGGGAUU   74 Target Full Sequence	1.5	Zea mays clone 1471472 mRNA sequence	NA	coding protein	psRNATarget
EU942844.1	ncRNA:21   GGAAGCCCUAAUUUCCCCUAA   1   ||||=||||||=||||||||| targets:154   CCUUUGGGAUUGAAGGGGAUU   174 Target Full Sequence	2.5	Zea mays clone 1540330 mRNA sequence	NA	coding protein	psRNATarget
XM_020546797.1	ncRNA:21   GGAAGCCCUAAUUUCCCCUAA   1   ||||*||||||=||||||||| targets:5165   CCUUGGGGAUUGAAGGGGAUU   5185 Target Full Sequence	2.5	PREDICTED: Zea mays protein TIFY 11d (LOC103643602), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008666766.2	ncRNA:21   GGAAGCCCUAAUUUCCCCUAA   1   ||||*||||||=||||||||| targets:5299   CCUUGGGGAUUGAAGGGGAUU   5319 Target Full Sequence	2.5	PREDICTED: Zea mays protein TIFY 11d (LOC103643602), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001155936.1	ncRNA:21   GGAAGCCCUAAUUUCCCCUAA   1   *=*|*|||||||||||||||| targets:1253   GUAUGGGGAUUAAAGGGGAUU   1273 Target Full Sequence	2.0	Zea mays F-box protein GID2 (LOC100283034), mRNA	NA	coding protein	psRNATarget
EU963234.1	ncRNA:21   GGAAGCCCUAAUUUCCCCUAA   1   *=*|*|||||||||||||||| targets:1253   GUAUGGGGAUUAAAGGGGAUU   1273 Target Full Sequence	2.0	Zea mays clone 259577 F-box protein GID2 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001347123.1	ncRNA:21   GGAAGCCCUAAUUUCCCCUAA   1   ***||*||||||||||||||* targets:1018   GACUCUGGAUUAAAGGGGAUA   1038 Target Full Sequence	3.0	Zea mays alpha/beta-Hydrolases superfamily protein (LOC100502400), transcript variant 1, mRNA	NA	coding protein	psRNATarget