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BaseInfo

ncRNA ID	novel_zma_miR9607
Species	Zea mays
Class	miRNA
Genome position	Chr8:178300450-178300504 [+]
Reference genome	RefGen_v4
Source	SRR4237225
Length	24
Mature sequence(if miRNA)	1 - ACAUAGAGCUAAGACAAUGUGUCU - 24
Stem-loop(if miRNA)	-ACAU      -      A        C      AGAGCU AAGACA UGUGUCUU G      |||||| |||||| ||||||||      UUUUGA UUCUGU ACAUAGAA C UUUUU      G      -        C
Stem-loop sequence	ACAUAGAGCUAAGACAAUGUGUCUUCGCCAAGAUACAUGUCUUGAGUUUUUUUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU945043.1	ncRNA:24   UCUGUGUAACAGAAUCGAGAUACA   1   |||||||*|||||||||||||||| targets:1024   AGACACAGUGUCUUAGCUCUAUGU   1047 Target Full Sequence	1.0	Zea mays clone 239070 mRNA sequence	NA	coding protein	psRNATarget
XM_020539225.1	ncRNA:24   UCUGUGUAACAGAAUCGAGAUACA   1   |||||||*|||||||||||||||| targets:376   AGACACAGUGUCUUAGCUCUAUGU   399 Target Full Sequence	1.0	PREDICTED: Zea mays probable histidine kinase 2 (LOC109940133), mRNA	NA	coding protein	psRNATarget
XM_008668777.2	ncRNA:24   UCUGUGUAACAGAAUCGAGAUACA   1   |||||||*|||||||||||||||| targets:893   AGACACAGUGUCUUAGCUCUAUGU   916 Target Full Sequence	1.0	PREDICTED: Zea mays alpha/beta-Hydrolases superfamily protein (LOC100191177), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008668776.2	ncRNA:24   UCUGUGUAACAGAAUCGAGAUACA   1   |||||||*|||||||||||||||| targets:917   AGACACAGUGUCUUAGCUCUAUGU   940 Target Full Sequence	1.0	PREDICTED: Zea mays alpha/beta-Hydrolases superfamily protein (LOC100191177), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020547330.1	ncRNA:24   UCUGUGUAACAGAAUCGAGAUACA   1   |||||||*|||||||||||||||| targets:1920   AGACACAGUGUCUUAGCUCUAUGU   1943 Target Full Sequence	1.0	PREDICTED: Zea mays alpha/beta-Hydrolases superfamily protein (LOC100191177), transcript variant X1, mRNA	NA	coding protein	psRNATarget
AY103603.1	ncRNA:24   UCUGUGUAACAGAAUCGAGAUACA   1   |||||||*|||||||*|||||||| targets:793   AGACACAGUGUCUUANCUCUAUGU   816 Target Full Sequence	2.5	Zea mays PCO094169 mRNA sequence	NA	coding protein	psRNATarget
EU974433.1	ncRNA:24   UCUGUGUAACAGAAUCGAGAUACA   1   |||||||*||||||||||||||*| targets:448   AGACACAGUGUCUUAGCUCUAUAU   471 Target Full Sequence	2.5	Zea mays clone 449244 mRNA sequence	NA	coding protein	psRNATarget
EU957329.1	ncRNA:24   UCUGUGUAACAGAAUCGAGAUACA   1   |||||||*||||||||||||||*| targets:617   AGACACAGUGUCUUAGCUCUAUAU   640 Target Full Sequence	2.5	Zea mays clone 1588642 REX1 DNA Repair family protein mRNA, complete cds	NA	coding protein	psRNATarget