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BaseInfo

ncRNA ID	novel_zma_miR9606
Species	Zea mays
Class	miRNA
Genome position	Chr8:121002121-121002233 [+]
Reference genome	RefGen_v4
Source	SRR4237225
Length	24
Mature sequence(if miRNA)	90 - ACGGCACUCGGCAAAGACGACCUC - 113
Stem-loop(if miRNA)	--                    AAUU                      ACA     A   GGUCGUCUUUGCCGAGUGCC    GGGACACUCGGCAAAGAGCCUG   UGGGG C   ||||||||||||||||||||    ||||||||||||||||||||||   ||||| C   CCAGCAGAAACGGCUCACGG    CCCUGUGAGCCGUUUCUCGGGC   GUCCC C CU                    CAAU                      --G     U
Stem-loop sequence	GGUCGUCUUUGCCGAGUGCCAAUUGGGACACUCGGCAAAGAGCCUGACAUGGGGACCCUCCCUGGCGGGCUCUUUGCCGAGUGUCCCUAACGGCACUCGGCAAAGACGACCUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB169026.1	ncRNA:24   CUCCAGCAGAAACGGCUCACGGCA   1   |||||||*|||||||||||||||* targets:44   GAGGUCGGCUUUGCCGAGUGCCGC   67 Target Full Sequence	2.0	Sequence 6690 from Patent EP2559767	NA	coding protein	psRNATarget
HI408565.1	ncRNA:24   CUCCAGCAGAAACGGCUCACGGCA   1   |||||||*|||||||||||||||* targets:44   GAGGUCGGCUUUGCCGAGUGCCGC   67 Target Full Sequence	2.0	Sequence 6690 from Patent EP2074227	NA	coding protein	psRNATarget
LQ240695.1	ncRNA:24   CUCCAGCAGAAACGGCUCACGGCA   1   |||||||*|||||||||||||||* targets:44   GAGGUCGGCUUUGCCGAGUGCCGC   67 Target Full Sequence	2.0	Sequence 6690 from Patent EP2985353	NA	coding protein	psRNATarget
HI406962.1	ncRNA:24   CUCCAGCAGAAACGGCUCACGGCA   1   ||||-|*||||||||||||||||* targets:14   GAGG-CUUCUUUGCCGAGUGCCGA   36 Target Full Sequence	2.0	Sequence 5087 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239092.1	ncRNA:24   CUCCAGCAGAAACGGCUCACGGCA   1   ||||-|*||||||||||||||||* targets:14   GAGG-CUUCUUUGCCGAGUGCCGA   36 Target Full Sequence	2.0	Sequence 5087 from Patent EP2985353	NA	coding protein	psRNATarget
JB167423.1	ncRNA:24   CUCCAGCAGAAACGGCUCACGGCA   1   ||||-|*||||||||||||||||* targets:14   GAGG-CUUCUUUGCCGAGUGCCGA   36 Target Full Sequence	2.0	Sequence 5087 from Patent EP2559767	NA	coding protein	psRNATarget
EZ087925.1	ncRNA:24   CUCCAGCAGAAACGGCUCACGGCA   1   *|*|****|||||||||||||||| targets:88   AAAGAAAGCUUUGCCGAGUGCCGU   111 Target Full Sequence	3.0	TSA: Zea mays contig23571, mRNA sequence	NA	coding protein	psRNATarget
BT067215.1	ncRNA:24   CUCCAGCAGAAACGGCUCACGGCA   1   *|*|****|||||||||||||||| targets:1187   AAAGAAAGCUUUGCCGAGUGCCGU   1210 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0310H18 mRNA, complete cds	NA	coding protein	psRNATarget
BT064046.1	ncRNA:24   CUCCAGCAGAAACGGCUCACGGCA   1   *|*|****|||||||||||||||| targets:1324   AAAGAAAGCUUUGCCGAGUGCCGU   1347 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0133L10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175109.1	ncRNA:24   CUCCAGCAGAAACGGCUCACGGCA   1   *|*|****|||||||||||||||| targets:1324   AAAGAAAGCUUUGCCGAGUGCCGU   1347 Target Full Sequence	3.0	Zea mays 1-aminocyclopropane-1-carboxylate oxidase2 (cl955_1), mRNA	NA	coding protein	psRNATarget
EU943169.1	ncRNA:24   CUCCAGCAGAAACGGCUCACGGCA   1   ***|*|||||||||||||||||** targets:741   AUCGCCGUCUUUGCCGAGUGCCUG   764 Target Full Sequence	2.5	Zea mays clone 1575275 mRNA sequence	NA	coding protein	psRNATarget