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BaseInfo

ncRNA ID	novel_zma_miR9605
Species	Zea mays
Class	miRNA
Genome position	Chr8:94042066-94042158 [+]
Reference genome	RefGen_v4
Source	SRR4237225
Length	24
Mature sequence(if miRNA)	70 - AGAUUGGUGUAACCGAACAAGCCC - 93
Stem-loop(if miRNA)	--  A                 UC     UUUUU  CUA   C        GC UGUUCGGUUGUAUCAAU  AGAAG     GA   GGA GGGAUU   || |||||||||||||||||  |||||     ||   ||| |||||U   CG ACAAGCCAAUGUGGUUA  UCUUC     CU   CCU CCCUAA CC  A                 GA     ---CC  -AA   C
Stem-loop sequence	GCAUGUUCGGUUGUAUCAAUUCAGAAGUUUUUGACUAGGACGGGAUUUAAUCCCCUCCAAUCCCCUUCUAGAUUGGUGUAACCGAACAAGCCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ095217.1	ncRNA:24   CCCGAACAAGCCAAUGUGGUUAGA   1   |||||||||||||||||||||||* targets:36   GGGCUUGUUCGGUUACACCAAUCC   59 Target Full Sequence	1.0	TSA: Zea mays contig30870, mRNA sequence	NA	coding protein	psRNATarget
XM_008656925.2	ncRNA:24   CCCGAACAAGCCAAUGUGGUUAGA   1   |||||||||||||||||||||||* targets:20   GGGCUUGUUCGGUUACACCAAUCC   43 Target Full Sequence	1.0	PREDICTED: Zea mays OSJNBa0059D20.8-like protein (LOC100304325), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020542872.1	ncRNA:24   CCCGAACAAGCCAAUGUGGUUAGA   1   |||||||||||||||||||||||* targets:1267   GGGCUUGUUCGGUUACACCAAUCC   1290 Target Full Sequence	1.0	PREDICTED: Zea mays LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.3 (LOC103634808), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001157439.1	ncRNA:24   CCCGAACAAGCCAAUGUGGUUAGA   1   |||||||||||||||||=|||||* targets:444   GGGCUUGUUCGGUUACAUCAAUCC   467 Target Full Sequence	2.5	Zea mays protein transport protein SEC61 gamma subunit (LOC100284544), mRNA	NA	coding protein	psRNATarget
EU968801.1	ncRNA:24   CCCGAACAAGCCAAUGUGGUUAGA   1   |||||||||||||||||=|||||* targets:444   GGGCUUGUUCGGUUACAUCAAUCC   467 Target Full Sequence	2.5	Zea mays clone 324211 protein transport protein SEC61 gamma subunit mRNA, complete cds	NA	coding protein	psRNATarget
HI406796.1	ncRNA:24   CCCGAACAAGCCAAUGUGGUUAGA   1   ||||*|||||||||||||||||=* targets:12   GGGCAUGUUCGGUUACACCAAUUC   35 Target Full Sequence	2.5	Sequence 4921 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238926.1	ncRNA:24   CCCGAACAAGCCAAUGUGGUUAGA   1   ||||*|||||||||||||||||=* targets:12   GGGCAUGUUCGGUUACACCAAUUC   35 Target Full Sequence	2.5	Sequence 4921 from Patent EP2985353	NA	coding protein	psRNATarget
JB167257.1	ncRNA:24   CCCGAACAAGCCAAUGUGGUUAGA   1   ||||*|||||||||||||||||=* targets:12   GGGCAUGUUCGGUUACACCAAUUC   35 Target Full Sequence	2.5	Sequence 4921 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008655395.2	ncRNA:24   CCCGAACAAGCCAAUGUGGUUAGA   1   ||*||||||||*|||||||||||| targets:484   GGCCUUGUUCGUUUACACCAAUCU   507 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103633684 (LOC103633684), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB163489.1	ncRNA:22   CGAACAAGCCAAUGUGGUUAGA   1   |||||||||*|||||||||||* targets:1   GCUUGUUCGUUUACACCAAUCC   22 Target Full Sequence	2.5	Sequence 1153 from Patent EP2559767	NA	coding protein	psRNATarget
HI403028.1	ncRNA:22   CGAACAAGCCAAUGUGGUUAGA   1   |||||||||*|||||||||||* targets:1   GCUUGUUCGUUUACACCAAUCC   22 Target Full Sequence	2.5	Sequence 1153 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235158.1	ncRNA:22   CGAACAAGCCAAUGUGGUUAGA   1   |||||||||*|||||||||||* targets:1   GCUUGUUCGUUUACACCAAUCC   22 Target Full Sequence	2.5	Sequence 1153 from Patent EP2985353	NA	coding protein	psRNATarget