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BaseInfo

ncRNA ID	novel_zma_miR9601
Species	Zea mays
Class	miRNA
Genome position	Chr8:105092444-105092534 [-]
Reference genome	RefGen_v4
Source	SRR4237225
Length	24
Mature sequence(if miRNA)	68 - GUCGGGCACUCGACAAAGAAGGCU - 91
Stem-loop(if miRNA)	--   G        AC     A     --           GC   CG   GUC GGCACUCG  AAAGA GGCUU  UGCCGAGAGCC  ACU  G   ||| ||||||||  ||||| |||||  |||||||||||  |||   CAG UCGUGAGC  UUUCU CCGAG  ACGGCUCUCGG  UGA  U CA   G        CA     -     CA           AU   AA
Stem-loop sequence	GUCGGGCACUCGACAAAGAAGGCUUUGCCGAGAGCCGCACUCGGUAAAGUUAGGCUCUCGGCAACGAGCCUCUUUACCGAGUGCUGGACAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008654495.2	ncRNA:24   UCGGAAGAAACAGCUCACGGGCUG   1   |||||||||||*|||||||||||| targets:12   AGCCUUCUUUGCCGAGUGCCCGAC   35 Target Full Sequence	1.5	PREDICTED: Zea mays probable GMP synthase [glutamine-hydrolyzing] (LOC103632764), mRNA	NA	coding protein	psRNATarget
XM_020545810.1	ncRNA:24   UCGGAAGAAACAGCUCACGGGCUG   1   =*|=||=||||||||||||||||| targets:326   GACUUUUUUUGUCGAGUGCCCGAC   349 Target Full Sequence	1.0	PREDICTED: Zea mays zinc finger BED domain-containing protein RICESLEEPER 2-like (LOC109943047), mRNA	NA	coding protein	psRNATarget
BT055423.1	ncRNA:24   UCGGAAGAAACAGCUCACGGGCUG   1   ***||||||||*|||||||||||* targets:141   UAACUUCUUUGCCGAGUGCCCGAA   164 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0179M04 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165647.1	ncRNA:24   UCGGAAGAAACAGCUCACGGGCUG   1   ***||||||||*|||||||||||* targets:141   UAACUUCUUUGCCGAGUGCCCGAA   164 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304195 (LOC100304195), mRNA	NA	coding protein	psRNATarget
BT054268.1	ncRNA:24   UCGGAAGAAACAGCUCACGGGCUG   1   ***||||||||*|||||||||||* targets:2160   UAACUUCUUUGCCGAGUGCCCGAA   2183 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0206G23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152461.1	ncRNA:24   UCGGAAGAAACAGCUCACGGGCUG   1   ***||||||||*|||||||||||* targets:2160   UAACUUCUUUGCCGAGUGCCCGAA   2183 Target Full Sequence	2.5	Zea mays uncharacterized LOC100279456 (IDP836), mRNA	NA	coding protein	psRNATarget
XM_020543430.1	ncRNA:24   UCGGAAGAAACAGCUCACGGGCUG   1   |||--||||||*|||||||||||* targets:1175   AGC--UCUUUGCCGAGUGCCCGAA   1196 Target Full Sequence	2.5	PREDICTED: Zea mays protein enabled homolog (LOC103636633), mRNA	NA	coding protein	psRNATarget
BT084886.1	ncRNA:24   UCGGAAGAAACAGCUCACGGGCUG   1   |||**|||*||||||*|||||||| targets:104   AGCAGUCUGUGUCGAAUGCCCGAC   127 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0200P15 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008671736.2	ncRNA:24   UCGGAAGAAACAGCUCACGGGCUG   1   =*****|||||*|||||||||||| targets:249   GCAGGACUUUGCCGAGUGCCCGAC   272 Target Full Sequence	2.5	PREDICTED: Zea mays probable serine/threonine-protein kinase PBL28 (LOC103647166), mRNA	NA	coding protein	psRNATarget