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BaseInfo

ncRNA ID	novel_zma_miR9598
Species	Zea mays
Class	miRNA
Genome position	Chr7:178592495-178592631 [+]
Reference genome	RefGen_v4
Source	SRR4237225
Length	21
Mature sequence(if miRNA)	1 - CAAACCAGACUGUUUGCAGCC - 21
Stem-loop(if miRNA)	--C    C          C    - -      A       AA      C  C        -  AACAAUA    AAAC AGACUGUUUG AGCC C CUCACA AAAGGAG  UAGAUC CA CUGCAGGU GC       C    |||| |||||||||| |||| | |||||| |||||||  |||||| || |||||||| ||       A    UUUG UCUGACAAAC UCGG G GAGUGU UUUCCUC  AUCUGG GU GACGUCCA UG       A ACA    A          A    A A      C       -C      A  A        G  CAAAACU
Stem-loop sequence	CAAACCAGACUGUUUGCAGCCCCUCACAAAAAGGAGAAUAGAUCCCACCUGCAGGUGCAACAAUACAAUCAAAACGUGACCUGCAGAUGAGGUCUACCUCCUUUCUGUGAGAGAGGCUACAAACAGUCUAGUUUACA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ073016.1	ncRNA:21   CCGACGUUUGUCAGACCAAAC   1   ||||||||||||*|||||||| targets:53   GGCUGCAAACAGCCUGGUUUG   73 Target Full Sequence	1.5	TSA: Zea mays contig08653, mRNA sequence	NA	coding protein	psRNATarget
JB163804.1	ncRNA:21   CCGACGUUUGUCAGACCAAAC   1   ||||||||||||*|||||||| targets:177   GGCUGCAAACAGCCUGGUUUG   197 Target Full Sequence	1.5	Sequence 1468 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235473.1	ncRNA:21   CCGACGUUUGUCAGACCAAAC   1   ||||||||||||*|||||||| targets:177   GGCUGCAAACAGCCUGGUUUG   197 Target Full Sequence	1.5	Sequence 1468 from Patent EP2985353	NA	coding protein	psRNATarget
HI403343.1	ncRNA:21   CCGACGUUUGUCAGACCAAAC   1   ||||||||||||*|||||||| targets:177   GGCUGCAAACAGCCUGGUUUG   197 Target Full Sequence	1.5	Sequence 1468 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008653247.2	ncRNA:21   CCGACGUUUGUCAGACCAAAC   1   ||||||||||||*|||||||| targets:138   GGCUGCAAACAGCCUGGUUUG   158 Target Full Sequence	1.5	PREDICTED: Zea mays 50S ribosomal protein L18 (LOC103631773), mRNA	NA	coding protein	psRNATarget
EU968721.1	ncRNA:21   CCGACGUUUGUCAGACCAAAC   1   ||||*|||||||||||||||| targets:1042   GGCUACAAACAGUCUGGUUUG   1062 Target Full Sequence	1.0	Zea mays clone 323697 tyrosine specific protein phosphatase family protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020547635.1	ncRNA:21   CCGACGUUUGUCAGACCAAAC   1   |||||||||||*||||||||| targets:2558   GGCUGCAAACACUCUGGUUUG   2578 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X7, mRNA	NA	coding protein	psRNATarget
AY111544.1	ncRNA:21   CCGACGUUUGUCAGACCAAAC   1   |||||||||||*||||||||| targets:982   GGCUGCAAACACUCUGGUUUG   1002 Target Full Sequence	1.5	Zea mays CL947_1 mRNA sequence	NA	coding protein	psRNATarget
X55314.1	ncRNA:21   CCGACGUUUGUCAGACCAAAC   1   |||||||||||*||||||||| targets:1026   GGCUGCAAACACUCUGGUUUG   1046 Target Full Sequence	1.5	Zea mays A2 gene	NA	coding protein	psRNATarget
XM_020547631.1	ncRNA:21   CCGACGUUUGUCAGACCAAAC   1   |||||||||||*||||||||| targets:3458   GGCUGCAAACACUCUGGUUUG   3478 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020547630.1	ncRNA:21   CCGACGUUUGUCAGACCAAAC   1   |||||||||||*||||||||| targets:3475   GGCUGCAAACACUCUGGUUUG   3495 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020547634.1	ncRNA:21   CCGACGUUUGUCAGACCAAAC   1   |||||||||||*||||||||| targets:4333   GGCUGCAAACACUCUGGUUUG   4353 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_020547633.1	ncRNA:21   CCGACGUUUGUCAGACCAAAC   1   |||||||||||*||||||||| targets:4336   GGCUGCAAACACUCUGGUUUG   4356 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020547632.1	ncRNA:21   CCGACGUUUGUCAGACCAAAC   1   |||||||||||*||||||||| targets:4354   GGCUGCAAACACUCUGGUUUG   4374 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020547629.1	ncRNA:21   CCGACGUUUGUCAGACCAAAC   1   |||||||||||*||||||||| targets:4356   GGCUGCAAACACUCUGGUUUG   4376 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X1, mRNA	NA	coding protein	psRNATarget