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BaseInfo

ncRNA ID novel_zma_miR9596
Species Zea mays
Class miRNA
Genome position Chr7:135683104-135683189 [+]
Reference genome RefGen_v4
Source SRR4237225
Length 21
Mature sequence(if miRNA) 66 - CCCUUCAAUCCCCUCCAAUCC - 86
Stem-loop(if miRNA) --U       A                  CU   U     CAA
   UUGGAGG GAUUGAGGGGCAUAUAAU  CUU CUAAU   A
   ||||||| ||||||||||||||||||  ||| |||||
   AACCUCC CUAACUUCCCGUAUAUUA  GAA GAUUA   A
CCU       C                  AG   C     AUA
Stem-loop sequence UUUGGAGGAGAUUGAGGGGCAUAUAAUCUCUUUCUAAUCAAAAAUAAUUAGCAAGGAAUUAUAUGCCCUUCAAUCCCCUCCAAUCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ106816.1
ncRNA:21   CCUAACCUCCCCUAACUUCCC   1
  |||||||||||||||||=|||
targets:262   GGAUUGGAGGGGAUUGAGGGG   282

1.5 TSA: Zea mays contig42474, mRNA sequence NA coding protein psRNATarget
XM_020540504.1
ncRNA:21   CCUAACCUCCCCUAACUUCCC   1
  |||||||||||||||||=|||
targets:1812   GGAUUGGAGGGGAUUGAGGGG   1832

1.5 PREDICTED: Zea mays nucleolar RNA helicase 2 (LOC100281387), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020540503.1
ncRNA:21   CCUAACCUCCCCUAACUUCCC   1
  |||||||||||||||||=|||
targets:2250   GGAUUGGAGGGGAUUGAGGGG   2270

1.5 PREDICTED: Zea mays nucleolar RNA helicase 2 (LOC100281387), transcript variant X1, mRNA NA coding protein psRNATarget
HI403275.1
ncRNA:21   CCUAACCUCCCCUAACUUCCC   1
  ||=||||||||||||||=|||
targets:34   GGGUUGGAGGGGAUUGAGGGG   54

2.5 Sequence 1400 from Patent EP2074227 NA coding protein psRNATarget
LQ235405.1
ncRNA:21   CCUAACCUCCCCUAACUUCCC   1
  ||=||||||||||||||=|||
targets:34   GGGUUGGAGGGGAUUGAGGGG   54

2.5 Sequence 1400 from Patent EP2985353 NA coding protein psRNATarget
JB163736.1
ncRNA:21   CCUAACCUCCCCUAACUUCCC   1
  ||=||||||||||||||=|||
targets:34   GGGUUGGAGGGGAUUGAGGGG   54

2.5 Sequence 1400 from Patent EP2559767 NA coding protein psRNATarget
BT069264.1
ncRNA:21   CCU-AACCUCCCCUAACUUCCC   1
  |||-||||||||||||||||||
targets:545   GGAAUUGGAGGGGAUUGAAGGG   566

2.0 Zea mays full-length cDNA clone ZM_BFc0018B12 mRNA, complete cds NA coding protein psRNATarget
EU960473.1
ncRNA:21   CCUAACCUCCCCUAACUUCCC   1
  |||||||||*|||||||||||
targets:74   GGAUUGGAGAGGAUUGAAGGG   94

1.5 Zea mays clone 225209 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU963775.1
ncRNA:21   CCUAACCUCCCCUAACUUCCC   1
  |||||||||*|||||||||||
targets:170   GGAUUGGAGAGGAUUGAAGGG   190

1.5 Zea mays clone 272562 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU961196.1
ncRNA:21   CCUAACCUCCCCUAACUUCCC   1
  |||||||||*|||||||||||
targets:312   GGAUUGGAGAGGAUUGAAGGG   332

1.5 Zea mays clone 233383 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU964415.1
ncRNA:21   CCUAACCUCCCCUAACUUCCC   1
  |||||||||*|||||||||||
targets:696   GGAUUGGAGAGGAUUGAAGGG   716

1.5 Zea mays clone 278711 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001245881.1
ncRNA:21   CCUAACCUCCCCUAACUUCCC   1
  |||||||||*|||||||||||
targets:696   GGAUUGGAGAGGAUUGAAGGG   716

1.5 Zea mays hypothetical protein (LOC100276749), mRNA NA coding protein psRNATarget
BT069064.1
ncRNA:21   CCUAACCUCCCCUAACUUCCC   1
  |||||||||*|||||||||||
targets:759   GGAUUGGAGAGGAUUGAAGGG   779

1.5 Zea mays full-length cDNA clone ZM_BFb0160O17 mRNA, complete cds NA coding protein psRNATarget
BT065224.1
ncRNA:21   CCUAACCUCCCCUAACUUCCC   1
  |||||||||*|||||||||||
targets:742   GGAUUGGAGAGGAUUGAAGGG   762

1.5 Zea mays full-length cDNA clone ZM_BFb0046E21 mRNA, complete cds NA coding protein psRNATarget
NM_001150473.2
ncRNA:21   CCUAACCUCCCCUAACUUCCC   1
  |||||||||*|||||||||||
targets:797   GGAUUGGAGAGGAUUGAAGGG   817

1.5 Zea mays hypothetical protein (LOC100276749), mRNA NA coding protein psRNATarget
BT062705.1
ncRNA:21   CCUAACCUCCCCUAACUUCCC   1
  |||||||||*|||||||||||
targets:797   GGAUUGGAGAGGAUUGAAGGG   817

1.5 Zea mays full-length cDNA clone ZM_BFb0335N06 mRNA, complete cds NA coding protein psRNATarget
XM_008678753.2
ncRNA:21   CCUAACCUCCCCUAACUUCCC   1
  |||||||||*|||||||||||
targets:842   GGAUUGGAGAGGAUUGAAGGG   862

1.5 PREDICTED: Zea mays hypothetical protein (LOC100276749), transcript variant X1, mRNA NA coding protein psRNATarget
BT087485.1
ncRNA:21   CCUAACCUCCCCUAACUUCCC   1
  |||||*|||||||||||||||
targets:37   GGAUUAGAGGGGAUUGAAGGG   57

1.0 Zea mays full-length cDNA clone ZM_BFb0092B21 mRNA, complete cds NA coding protein psRNATarget
BT066512.1
ncRNA:21   CCUAACCUCCCCUAACUUCCC   1
  |||||||||||||||||||*|
targets:1925   GGAUUGGAGGGGAUUGAAGUG   1945

1.5 Zea mays full-length cDNA clone ZM_BFb0013P08 mRNA, complete cds NA coding protein psRNATarget
NM_001350033.1
ncRNA:21   CCUAACCUCCCCUAACUUCCC   1
  |||||||||||||||||||*|
targets:2834   GGAUUGGAGGGGAUUGAAGUG   2854

1.5 Zea mays uncharacterized LOC100383187 (LOC100383187), transcript variant 2, mRNA NA coding protein psRNATarget
NM_001350032.1
ncRNA:21   CCUAACCUCCCCUAACUUCCC   1
  |||||||||||||||||||*|
targets:2859   GGAUUGGAGGGGAUUGAAGUG   2879

1.5 Zea mays uncharacterized LOC100383187 (LOC100383187), transcript variant 1, mRNA NA coding protein psRNATarget
EZ098881.1
ncRNA:21   CCUAACCUCCCCUAACUUCCC   1
  ||||*||||||||||||=|||
targets:43   GGAUCGGAGGGGAUUGAGGGG   63

2.5 TSA: Zea mays contig34536, mRNA sequence NA coding protein psRNATarget
NM_001348011.1
ncRNA:21   CCUAACCUCCCCUAACUUCCC   1
  ||||||*=|||||||||||||
targets:384   GGAUUGAGGGGGAUUGAAGGG   404

2.0 Zea mays hypothetical protein (LOC100277538), mRNA NA coding protein psRNATarget
BT062266.1
ncRNA:21   CCUAACCUCCCCUAACUUCCC   1
  ||||||*||||||||||=|||
targets:6   GGAUUGAAGGGGAUUGAGGGG   26

2.5 Zea mays full-length cDNA clone ZM_BFb0271J02 mRNA, complete cds NA coding protein psRNATarget
BT085111.1
ncRNA:21   CCUAACCUCCCCUAACUUCCC   1
  ||||||*|||||||||=||||
targets:1276   GGAUUGAAGGGGAUUGGAGGG   1296

2.5 Zea mays full-length cDNA clone ZM_BFb0292J13 mRNA, complete cds NA coding protein psRNATarget
HI406037.1
ncRNA:21   CCUAACCUCCCCUAACUUCCC   1
  ||*||||||||||*|||||||
targets:30   GGUUUGGAGGGGACUGAAGGG   50

2.5 Sequence 4162 from Patent EP2074227 NA coding protein psRNATarget
JB166498.1
ncRNA:21   CCUAACCUCCCCUAACUUCCC   1
  ||*||||||||||*|||||||
targets:30   GGUUUGGAGGGGACUGAAGGG   50

2.5 Sequence 4162 from Patent EP2559767 NA coding protein psRNATarget
LQ238167.1
ncRNA:21   CCUAACCUCCCCUAACUUCCC   1
  ||*||||||||||*|||||||
targets:30   GGUUUGGAGGGGACUGAAGGG   50

2.5 Sequence 4162 from Patent EP2985353 NA coding protein psRNATarget
EU958579.1
ncRNA:21   CCUAACCUCCCCUAACUUCCC   1
  |*|||||||*|||||||||||
targets:36   GUAUUGGAGAGGAUUGAAGGG   56

1.5 Zea mays clone 1703813 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU964521.1
ncRNA:21   CCUAACCUCCCCUAACUUCCC   1
  ||*||||||||||*|||||||
targets:858   GGUUUGGAGGGGACUGAAGGG   878

2.5 Zea mays clone 279503 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EZ059519.1
ncRNA:21   CCUAACCUCCCCUAACUUCCC   1
  ||*|||*=|||||||||||||
targets:431   GGUUUGAGGGGGAUUGAAGGG   451

3.0 TSA: Zea mays contig60641, mRNA sequence NA coding protein psRNATarget
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