Search result

BaseInfo

ncRNA ID	novel_zma_miR9589
Species	Zea mays
Class	miRNA
Genome position	Chr10:147440438-147440547 [+]
Reference genome	RefGen_v4
Source	SRR4237224
Length	21
Mature sequence(if miRNA)	1 - UGUACGGCGCCGGCGAACUCU - 21
Stem-loop(if miRNA)	--                                       CUUG    AAAGA  A   UGUACGGCGCCGGCGAACUCUCAAACACUCACACAGUCG    GAAC     CG A   |||||||||||||||||||||||||||||||||||||||    ||||     ||   ACAUGCCGCGGCCGCUUGAGAGUUUGUGAGUGUGUCGGU    UUUG     GC C CU                                       ----    GCGAA  A
Stem-loop sequence	UGUACGGCGCCGGCGAACUCUCAAACACUCACACAGUCGCUUGGAACAAAGACGAACACGAAGCGGUUUUGGCUGUGUGAGUGUUUGAGAGUUCGCCGGCGCCGUACAUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020544803.1	ncRNA:21   UCUCAAGCGGCCGCGGCAUGU   1   *||||||*|||||||*||||| targets:141   CGAGUUCCCCGGCGCGGUACA   161 Target Full Sequence	2.5	PREDICTED: Zea mays probable CCR4-associated factor 1 homolog 11 (LOC109939159), mRNA	NA	coding protein	psRNATarget
XM_008662512.2	ncRNA:21   UCUCAAGCGGCCGCGGCAUGU   1   *||||||*|||||||*||||| targets:142   CGAGUUCCCCGGCGCGGUACA   162 Target Full Sequence	2.5	PREDICTED: Zea mays probable CCR4-associated factor 1 homolog 11 (LOC103639808), mRNA	NA	coding protein	psRNATarget
XM_008662514.2	ncRNA:21   UCUCAAGCGGCCGCGGCAUGU   1   *||||||*|||||||*||||| targets:152   CGAGUUCCCCGGCGCGGUACA   172 Target Full Sequence	2.5	PREDICTED: Zea mays probable CCR4-associated factor 1 homolog 11 (LOC103639812), mRNA	NA	coding protein	psRNATarget
XM_008663001.2	ncRNA:21   UCUCAAGCGGCCGCGGCAUGU   1   *||||||*|||||||*||||| targets:152   CGAGUUCCCCGGCGCGGUACA   172 Target Full Sequence	2.5	PREDICTED: Zea mays probable CCR4-associated factor 1 homolog 11 (LOC103640413), mRNA	NA	coding protein	psRNATarget
XM_008662511.2	ncRNA:21   UCUCAAGCGGCCGCGGCAUGU   1   *||||||*|||||||*||||| targets:152   CGAGUUCCCCGGCGCGGUACA   172 Target Full Sequence	2.5	PREDICTED: Zea mays probable CCR4-associated factor 1 homolog 11 (LOC103639806), mRNA	NA	coding protein	psRNATarget
XM_008662517.1	ncRNA:21   UCUCAAGCGGCCGCGGCAUGU   1   *||||||*|||||||*||||| targets:225   CGAGUUCCCCGGCGCGGUACA   245 Target Full Sequence	2.5	PREDICTED: Zea mays probable CCR4-associated factor 1 homolog 11 (LOC103639820), mRNA	NA	coding protein	psRNATarget
XM_008662516.2	ncRNA:21   UCUCAAGCGGCCGCGGCAUGU   1   *||||||*|||||||*||||| targets:152   CGAGUUCCCCGGCGCGGUACA   172 Target Full Sequence	2.5	PREDICTED: Zea mays probable CCR4-associated factor 1 homolog 11 (LOC103639817), mRNA	NA	coding protein	psRNATarget
XM_008652333.2	ncRNA:21   UCUCAAGCGGCCGCGGCAUGU   1   *||||||*|||||||*||||| targets:321   CGAGUUCCCCGGCGCGGUACA   341 Target Full Sequence	2.5	PREDICTED: Zea mays probable CCR4-associated factor 1 homolog 11 (LOC103631416), mRNA	NA	coding protein	psRNATarget