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BaseInfo

ncRNA ID	novel_zma_miR9586
Species	Zea mays
Class	miRNA
Genome position	Chr5:204559926-204560019 [+]
Reference genome	RefGen_v4
Source	SRR4237224;SRR4237225;SRR4237227;SRR5105959;SRR5105961
Length	21
Mature sequence(if miRNA)	74 - UGAGUAGCACUCCUCGGGUCC - 94
Stem-loop(if miRNA)	--     C  C                  AACCAA   U    --A  G G   ACCUG GG GUGCUACUCAGACCAUCU      CUC GCUA   GC C A   ||||| || ||||||||||||||||||      ||| ||||   || |   UGGGC CC CACGAUGAGUCUGGUGGA      GAG CGAU   CG G A CC     U  U                  ------   U    CUC  G A
Stem-loop sequence	ACCUGCGGCGUGCUACUCAGACCAUCUAACCAACUCUGCUAAGCGCGAAAGGGCCUCUAGCUGAGAGGUGGUCUGAGUAGCACUCCUCGGGUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT087922.1	ncRNA:21   CCUGGGCUCCUCACGAUGAGU   1   |||||=||||||||||||||| targets:58   GGACCUGAGGAGUGCUACUCA   78 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0309F17 mRNA, complete cds	NA	coding protein	psRNATarget
EU968143.1	ncRNA:21   CCUGGGCUCCUCACGAUGAGU   1   |||||=||||||||||||||| targets:273   GGACCUGAGGAGUGCUACUCA   293 Target Full Sequence	1.0	Zea mays clone 315363 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT042256.1	ncRNA:21   CCUGGGCUCCUCACGAUGAGU   1   |||||=||||||||||||||| targets:427   GGACCUGAGGAGUGCUACUCA   447 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0181G14 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165693.1	ncRNA:21   CCUGGGCUCCUCACGAUGAGU   1   |||||=||||||||||||||| targets:1016   GGACCUGAGGAGUGCUACUCA   1036 Target Full Sequence	1.0	Zea mays uncharacterized LOC100304248 (LOC100304248), mRNA	NA	coding protein	psRNATarget
BT060590.1	ncRNA:21   CCUGGGCUCCUCACGAUGAGU   1   |||||=||||||||||||||| targets:1016   GGACCUGAGGAGUGCUACUCA   1036 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0019K01 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020552812.1	ncRNA:21   CCUGGGCUCCUCACGAUGAGU   1   |||||=||||||||||||||| targets:943   GGACCUGAGGAGUGCUACUCA   963 Target Full Sequence	1.0	PREDICTED: Zea mays nucleolin (LOC103654496), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT069885.1	ncRNA:21   CCUGGGCUCCUCACGAUGAGU   1   |*||||||||||||||||||| targets:510   GAACCCGAGGAGUGCUACUCA   530 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0307J01 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020546924.1	ncRNA:21   CCUGGGCUCCUCACGAUGAGU   1   |*|||=||||||||||||||| targets:49   GAACCUGAGGAGUGCUACUCA   69 Target Full Sequence	1.0	PREDICTED: Zea mays aspartic proteinase-like (LOC103643987), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_008667164.2	ncRNA:21   CCUGGGCUCCUCACGAUGAGU   1   |*|||=||||||||||||||| targets:480   GAACCUGAGGAGUGCUACUCA   500 Target Full Sequence	1.0	PREDICTED: Zea mays aspartic proteinase-like (LOC103643987), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020541043.1	ncRNA:21   CCUGGGCUCCUCACGAUGAGU   1   |*|||=||||||||||||||| targets:134   GAACCUGAGGAGUGCUACUCA   154 Target Full Sequence	1.0	PREDICTED: Zea mays aspartic proteinase (LOC103633578), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020546923.1	ncRNA:21   CCUGGGCUCCUCACGAUGAGU   1   |*|||=||||||||||||||| targets:595   GAACCUGAGGAGUGCUACUCA   615 Target Full Sequence	1.0	PREDICTED: Zea mays aspartic proteinase-like (LOC103643987), transcript variant X4, mRNA	NA	coding protein	psRNATarget
BT018637.1	ncRNA:21   CCUGGGCUCCUCACGAUGAGU   1   |*|||=||||||||||||||| targets:148   GAACCUGAGGAGUGCUACUCA   168 Target Full Sequence	1.0	Zea mays clone EL01N0504C03.d mRNA sequence	NA	coding protein	psRNATarget
XM_020546922.1	ncRNA:21   CCUGGGCUCCUCACGAUGAGU   1   |*|||=||||||||||||||| targets:538   GAACCUGAGGAGUGCUACUCA   558 Target Full Sequence	1.0	PREDICTED: Zea mays aspartic proteinase-like (LOC103643987), transcript variant X3, mRNA	NA	coding protein	psRNATarget
BT069231.2	ncRNA:21   CCUGGGCUCCUCACGAUGAGU   1   |||||=||*|||||||||||| targets:786   GGACCUGAUGAGUGCUACUCA   806 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0366D18 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020548144.1	ncRNA:21   CCUGGGCUCCUCACGAUGAGU   1   |||||=|||*||||||||||| targets:1821   GGACCUGAGAAGUGCUACUCA   1841 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103645967), transcript variant X4, mRNA	NA	coding protein	psRNATarget
BT036870.1	ncRNA:21   CCUGGGCUCCUCACGAUGAGU   1   |||||=*|||||||||||||= targets:283   GGACCUAAGGAGUGCUACUCG   303 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0145J11 mRNA, complete cds	NA	coding protein	psRNATarget
EZ516818.1	ncRNA:21   CCUGGGCUCCUCACGAUGAGU   1   *||||=||*|||||||||||| targets:41   UGACCUGAAGAGUGCUACUCA   61 Target Full Sequence	2.5	TSA: Zea mays cultivar W22 CL210Contig1.betc, mRNA sequence	NA	coding protein	psRNATarget
EU955688.1	ncRNA:21   CCUGGGCUCCUCACGAUGAGU   1   *||||=*|||||||||||||| targets:1226   AGACCUAAGGAGUGCUACUCA   1246 Target Full Sequence	2.0	Zea mays clone 1542479 mRNA sequence	NA	coding protein	psRNATarget
BT068819.1	ncRNA:21   CCUGGGCUCCUCACGAUGAGU   1   |*|||=||||||*|||||||| targets:1588   GAACCUGAGGAGCGCUACUCA   1608 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0028H02 mRNA, complete cds	NA	coding protein	psRNATarget