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BaseInfo

ncRNA ID novel_zma_miR9582
Species Zea mays
Class miRNA
Genome position Chr4:39691047-39691095 [+]
Reference genome RefGen_v4
Source SRR4237224
Length 22
Mature sequence(if miRNA) 28 - UUUAGCAAUGAAGUGACCAGGC - 49
Stem-loop(if miRNA) --  U      A   ---      AA
  CU GUCACU UCA   CUAGAU  U
  || |||||| |||   ||||||  G
  GA CAGUGA AGU   GAUUUA  G
CG  C      -   AAC      CA
Stem-loop sequence CUUGUCACUAUCACUAGAUAAUGGACAUUUAGCAAUGAAGUGACCAGGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008646225.2
ncRNA:22   CGGACCAGUGAAGUAACGAUUU   1
  |==||||||*||||||||||||
targets:325   GUUUGGUCAAUUCAUUGCUAAA   346

1.5 PREDICTED: Zea mays hypothetical protein (LOC103625826), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008646226.2
ncRNA:22   CGGACCAGUGAAGUAACGAUUU   1
  |==||||||*||||||||||||
targets:324   GUUUGGUCAAUUCAUUGCUAAA   345

1.5 PREDICTED: Zea mays hypothetical protein (LOC103625826), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008646224.2
ncRNA:22   CGGACCAGUGAAGUAACGAUUU   1
  |==||||||*||||||||||||
targets:334   GUUUGGUCAAUUCAUUGCUAAA   355

1.5 PREDICTED: Zea mays hypothetical protein (LOC103625826), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008646223.2
ncRNA:22   CGGACCAGUGAAGUAACGAUUU   1
  |==||||||*||||||||||||
targets:338   GUUUGGUCAAUUCAUUGCUAAA   359

1.5 PREDICTED: Zea mays hypothetical protein (LOC103625826), transcript variant X1, mRNA NA coding protein psRNATarget