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BaseInfo

ncRNA ID	novel_zma_miR9580
Species	Zea mays
Class	miRNA
Genome position	Chr4:33038021-33038161 [+]
Reference genome	RefGen_v4
Source	SRR4237224
Length	20
Mature sequence(if miRNA)	1 - AACCAGAAUGUUUGCAGCUC - 20
Stem-loop(if miRNA)	--                  UC                  GA C   C     GGUUUA    --       UU   AACCAGAAUGUUUGCAGC  CUCACAAAAAGGAGGAUG  C CCA CUGCA      UCAG  GUAACGU  U   ||||||||||||||||||  ||||||||||||||||||  | ||| |||||      ||||  |||||||  A   UUGGUCUUACAAACGUCG  GAGUGUUUUUUCUCCUAU  G GGU GGCGU      AGUC  UAUUGUA  G GU                  GA                  AC A   A     ------    GU       UU
Stem-loop sequence	AACCAGAAUGUUUGCAGCUCCUCACAAAAAGGAGGAUGGACCCCACCUGCAGGUUUAUCAGGUAACGUUUUAGUUAUGUUAUUGCUGAUGCGGAUGGAGCAUAUCCUCUUUUUUGUGAGAGGCUGCAAACAUUCUGGUUUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163883.1	ncRNA:20   CUCGACGUUUGUAAGACCAA   1   |=||||||||||*||||||| targets:115   GGGCUGCAAACAGUCUGGUU   134 Target Full Sequence	2.5	Sequence 1547 from Patent EP2559767	NA	coding protein	psRNATarget
HI403422.1	ncRNA:20   CUCGACGUUUGUAAGACCAA   1   |=||||||||||*||||||| targets:115   GGGCUGCAAACAGUCUGGUU   134 Target Full Sequence	2.5	Sequence 1547 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235552.1	ncRNA:20   CUCGACGUUUGUAAGACCAA   1   |=||||||||||*||||||| targets:115   GGGCUGCAAACAGUCUGGUU   134 Target Full Sequence	2.5	Sequence 1547 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020547635.1	ncRNA:20   CUCGACGUUUGUAAGACCAA   1   |=||||||||||*||||||| targets:2557   GGGCUGCAAACACUCUGGUU   2576 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X7, mRNA	NA	coding protein	psRNATarget
AY111544.1	ncRNA:20   CUCGACGUUUGUAAGACCAA   1   |=||||||||||*||||||| targets:981   GGGCUGCAAACACUCUGGUU   1000 Target Full Sequence	2.5	Zea mays CL947_1 mRNA sequence	NA	coding protein	psRNATarget
X55314.1	ncRNA:20   CUCGACGUUUGUAAGACCAA   1   |=||||||||||*||||||| targets:1025   GGGCUGCAAACACUCUGGUU   1044 Target Full Sequence	2.5	Zea mays A2 gene	NA	coding protein	psRNATarget
XM_020547631.1	ncRNA:20   CUCGACGUUUGUAAGACCAA   1   |=||||||||||*||||||| targets:3457   GGGCUGCAAACACUCUGGUU   3476 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020547630.1	ncRNA:20   CUCGACGUUUGUAAGACCAA   1   |=||||||||||*||||||| targets:3474   GGGCUGCAAACACUCUGGUU   3493 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020547634.1	ncRNA:20   CUCGACGUUUGUAAGACCAA   1   |=||||||||||*||||||| targets:4332   GGGCUGCAAACACUCUGGUU   4351 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_020547633.1	ncRNA:20   CUCGACGUUUGUAAGACCAA   1   |=||||||||||*||||||| targets:4335   GGGCUGCAAACACUCUGGUU   4354 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020547632.1	ncRNA:20   CUCGACGUUUGUAAGACCAA   1   |=||||||||||*||||||| targets:4353   GGGCUGCAAACACUCUGGUU   4372 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020547629.1	ncRNA:20   CUCGACGUUUGUAAGACCAA   1   |=||||||||||*||||||| targets:4355   GGGCUGCAAACACUCUGGUU   4374 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X1, mRNA	NA	coding protein	psRNATarget