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BaseInfo

ncRNA ID	novel_zma_miR9579
Species	Zea mays
Class	miRNA
Genome position	Chr4:186316459-186316597 [-]
Reference genome	RefGen_v4
Source	SRR4237224
Length	21
Mature sequence(if miRNA)	119 - UUCUCUUCUUCCUCACUCGGC - 139
Stem-loop(if miRNA)	--              A      CUA    ---------    G    G   A    -A  G -U  -AC  A   G   UUCUCUUCUUCCUC CUCGGC   CCUU         GGUG CGUG GGC CCAC  CA C  GG   GC CGG A   |||||||||||||| ||||||   ||||         |||| |||| ||| ||||  || |  ||   || |||   AAGAGAAGAAGGAG GAGCCG   GGAG         CUAC GCGC CCG GGUG  GU G  CC   CG GCC A GG              G      --C    CAGCAAGGC    G    G   C    CG  G UU  AUC  -   A
Stem-loop sequence	UUCUCUUCUUCCUCACUCGGCCUACCUUGGUGGCGUGGGGCACCACACAGCUGGACGCACGGGAAACCGGCCUACCUUGGUGGCGUGGCGCCGCGCGGCAUCCGGAACGACGAGGCGCCGAGGGAGGAAGAAGAGAAGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001153568.1	ncRNA:21   CGGCUCACUCCUUCUUCUCUU   1   ||||||*|||||=|||||||| targets:221   GCCGAGCGAGGAGGAAGAGAA   241 Target Full Sequence	2.5	Zea mays Vicilin-like seed storage protein (pco130570), mRNA	NA	coding protein	psRNATarget
EU953111.1	ncRNA:21   CGGCUCACUCCUUCUUCUCUU   1   ||||||*|||||=|||||||| targets:221   GCCGAGCGAGGAGGAAGAGAA   241 Target Full Sequence	2.5	Zea mays clone 1383292 cupin family protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008665513.2	ncRNA:21   CGGCUCACUCCUUCUUCUCUU   1   |=||||*|||||||||||||= targets:90   GUCGAGAGAGGAAGAAGAGAG   110 Target Full Sequence	2.0	PREDICTED: Zea mays GDSL esterase/lipase CPRD49 (LOC103642203), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008665512.1	ncRNA:21   CGGCUCACUCCUUCUUCUCUU   1   |=||||*|||||||||||||= targets:90   GUCGAGAGAGGAAGAAGAGAG   110 Target Full Sequence	2.0	PREDICTED: Zea mays GDSL esterase/lipase CPRD49 (LOC103642203), transcript variant X1, mRNA	NA	coding protein	psRNATarget
AY110869.1	ncRNA:21   CGGCUCACUCCUUCUUCUCUU   1   *||*|||||||=||||||||| targets:14   CCCCAGUGAGGGAGAAGAGAA   34 Target Full Sequence	2.5	Zea mays CL9361_1 mRNA sequence	NA	coding protein	psRNATarget
XM_008656289.2	ncRNA:21   CGGCUCACUCCUUCUUCUCUU   1   *|*||||||||||||||||=| targets:364   UCAGAGUGAGGAAGAAGAGGA   384 Target Full Sequence	2.5	PREDICTED: Zea mays protein trichome birefringence-like 28 (LOC103634496), mRNA	NA	coding protein	psRNATarget
EZ062370.1	ncRNA:21   CGGCUCACUCCUUCUUCUCUU   1   *==||*||||||||||||||= targets:24   UUUGAUUGAGGAAGAAGAGAG   44 Target Full Sequence	3.0	TSA: Zea mays contig63492, mRNA sequence	NA	coding protein	psRNATarget
EZ053711.1	ncRNA:21   CGGCUCACUCCUUCUUCUCUU   1   *==||*||||||||||||||= targets:1   CUUGAUUGAGGAAGAAGAGAG   21 Target Full Sequence	3.0	TSA: Zea mays contig54833, mRNA sequence	NA	coding protein	psRNATarget