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BaseInfo

ncRNA ID novel_zma_miR9569
Species Zea mays
Class miRNA
Genome position Chr10:92430087-92430137 [+]
Reference genome RefGen_v4
Source SRR4237224;SRR4237225
Length 24
Mature sequence(if miRNA) 28 - AGGACGUAUGUGCCCUCAGACACC - 51
Stem-loop(if miRNA) --UA      U  C  -       GU
    UCUGAG GC CA GCGUCUU  G
    |||||| || || |||||||
    AGACUC CG GU UGCAGGA  U
CCAC      C  U  A       AU
Stem-loop sequence UAUCUGAGUGCCCAGCGUCUUGUGUUAAGGACGUAUGUGCCCUCAGACACC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020542781.1
ncRNA:24   CCACAGACUCCCGUGUAUGCAGGA   1
  |||||||||||||||||=||||||
targets:2749   GGUGUCUGAGGGCACAUGCGUCCU   2772

1.5 PREDICTED: Zea mays phytanoyl-CoA dioxygenase 2 (LOC103635236), transcript variant X1, mRNA NA coding protein psRNATarget
BT019125.1
ncRNA:24   CCACAGACUCCCGUGUAUGCAGGA   1
  |||**||||||||||||=||||||
targets:359   GGUAGCUGAGGGCACAUGCGUCCU   382

1.5 Zea mays clone Contig739.F mRNA sequence NA coding protein psRNATarget
EU973405.1
ncRNA:24   CCACAGACUCCCGUGUAUGCAGGA   1
  ||***||||||||||||=||||||
targets:671   GGCACCUGAGGGCACAUGCGUCCU   694

1.5 Zea mays clone 398173 hypothetical protein mRNA, complete cds NA coding protein psRNATarget