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BaseInfo

ncRNA ID novel_zma_miR9548
Species Zea mays
Class miRNA
Genome position Chr4:127294604-127294653 [-]
Reference genome RefGen_v4
Source SRR1997865
Length 24
Mature sequence(if miRNA) 27 - AAGAGUCUUUGCCGAGUGUCCCCU - 50
Stem-loop(if miRNA) --AAGA                -  
      GUCUUUGCCGAGUGUC CCC
      |||||||||||||||| ||U
      CAGAAACGGCUCACAG GGG
UUUCGA                C  
Stem-loop sequence AAGAGUCUUUGCCGAGUGUCCCCUGGGCGACACUCGGCAAAGACAGCUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ239099.1
ncRNA:24   UCCCCUGUGAGCCGUUUCUGAGAA   1
  **||||||||||||||||||||**
targets:72   UUGGGACACUCGGCAAAGACUCCG   95

2.5 Sequence 5094 from Patent EP2985353 NA coding protein psRNATarget
JB167430.1
ncRNA:24   UCCCCUGUGAGCCGUUUCUGAGAA   1
  **||||||||||||||||||||**
targets:72   UUGGGACACUCGGCAAAGACUCCG   95

2.5 Sequence 5094 from Patent EP2559767 NA coding protein psRNATarget
HI406969.1
ncRNA:24   UCCCCUGUGAGCCGUUUCUGAGAA   1
  **||||||||||||||||||||**
targets:72   UUGGGACACUCGGCAAAGACUCCG   95

2.5 Sequence 5094 from Patent EP2074227 NA coding protein psRNATarget
LQ238823.1
ncRNA:24   UCCCCUGUGAGCCGUUUCU-GAGAA   1
  ****|||||||||||||||-|||||
targets:48   UUUUGACACUCGGCAAAGAGCUCUU   72

3.0 Sequence 4818 from Patent EP2985353 NA coding protein psRNATarget
LQ238823.1
ncRNA:24   UCCCCUGUGAGCCGUUUCU-GAGAA   1
  |****||||||||||||||-|||||
targets:88   AUAUAACACUCGGCAAAGAGCUCUU   112

3.0 Sequence 4818 from Patent EP2985353 NA coding protein psRNATarget
JB167154.1
ncRNA:24   UCCCCUGUGAGCCGUUUCU-GAGAA   1
  ****|||||||||||||||-|||||
targets:48   UUUUGACACUCGGCAAAGAGCUCUU   72

3.0 Sequence 4818 from Patent EP2559767 NA coding protein psRNATarget
JB167154.1
ncRNA:24   UCCCCUGUGAGCCGUUUCU-GAGAA   1
  |****||||||||||||||-|||||
targets:88   AUAUAACACUCGGCAAAGAGCUCUU   112

3.0 Sequence 4818 from Patent EP2559767 NA coding protein psRNATarget
HI406693.1
ncRNA:24   UCCCCUGUGAGCCGUUUCU-GAGAA   1
  ****|||||||||||||||-|||||
targets:48   UUUUGACACUCGGCAAAGAGCUCUU   72

3.0 Sequence 4818 from Patent EP2074227 NA coding protein psRNATarget
HI406693.1
ncRNA:24   UCCCCUGUGAGCCGUUUCU-GAGAA   1
  |****||||||||||||||-|||||
targets:88   AUAUAACACUCGGCAAAGAGCUCUU   112

3.0 Sequence 4818 from Patent EP2074227 NA coding protein psRNATarget
XM_008657421.2
ncRNA:24   UCCCCUGUGAGCCGUUUCUGAGAA   1
  |****|||||||||||||||||||
targets:22   AUAAAACACUCGGCAAAGACUCUU   45

0.0 PREDICTED: Zea mays GDSL esterase/lipase At1g28590 (LOC103634831), mRNA NA coding protein psRNATarget
XM_008645204.2
ncRNA:24   UCCCCUGUGAGCCGUUUCUGAGAA   1
  *****||||||||||||||||=||
targets:3123   CUCAAACACUCGGCAAAGACUUUU   3146

1.5 PREDICTED: Zea mays putative protein of unknown function (DUF640) domain family protein (LOC100278742), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020553261.1
ncRNA:24   UCCCCUGUGAGCCGUUUCUGAGAA   1
  *****||||||||||||||||=||
targets:3130   CUCAAACACUCGGCAAAGACUUUU   3153

1.5 PREDICTED: Zea mays putative protein of unknown function (DUF640) domain family protein (LOC100278742), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008645203.2
ncRNA:24   UCCCCUGUGAGCCGUUUCUGAGAA   1
  *****||||||||||||||||=||
targets:3191   CUCAAACACUCGGCAAAGACUUUU   3214

1.5 PREDICTED: Zea mays putative protein of unknown function (DUF640) domain family protein (LOC100278742), transcript variant X1, mRNA NA coding protein psRNATarget
BT054268.1
ncRNA:24   UCCCCUGUGAGCCGUUUCU-GAGAA   1
  |****||||||||||||||-|||||
targets:1968   AAAAAACACUCGGCAAAGAGCUCUU   1992

3.0 Zea mays full-length cDNA clone ZM_BFb0206G23 mRNA, complete cds NA coding protein psRNATarget
NM_001152461.1
ncRNA:24   UCCCCUGUGAGCCGUUUCU-GAGAA   1
  |****||||||||||||||-|||||
targets:1968   AAAAAACACUCGGCAAAGAGCUCUU   1992

3.0 Zea mays uncharacterized LOC100279456 (IDP836), mRNA NA coding protein psRNATarget
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