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BaseInfo

ncRNA ID	novel_zma_miR9539
Species	Zea mays
Class	miRNA
Genome position	Chr10:6035829-6035957 [+]
Reference genome	RefGen_v4
Source	SRR1583941;SRR1583942
Length	24
Mature sequence(if miRNA)	106 - GUUUGAAUCUUUUAAUGGUAUAGA - 129
Stem-loop(if miRNA)	--C               -  CC         CC       UACU       -UUA   G      C    AUACCAUUAAAAGAU CA  ACUUUGGAU  AUACCAU    AUCUCAC    CAU UGGUUC A    ||||||||||||||| ||  |||||||||  |||||||    |||||||    ||| |||||| C    UAUGGUAAUUUUCUA GU  UGAAAUCUA  UAUGGUA    UGGGGUG    GUA ACCGAG A AGA               A  -U         UA       --CC       UACA   -      U
Stem-loop sequence	CAUACCAUUAAAAGAUCACCACUUUGGAUCCAUACCAUUACUAUCUCACUUACAUGUGGUUCCACAUGAGCCAAUGACAUGUGGGGUCCAUGGUAUAUAUCUAAAGUUUGAAUCUUUUAAUGGUAUAGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008648225.2	ncRNA:24   AGAUAUGGUAAUUUUCUAAGUUUG   1   ||||||||||||||||||*||||| targets:1640   UCUAUACCAUUAAAAGAUCCAAAC   1663 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC103627911), mRNA	NA	coding protein	psRNATarget
NM_001175935.1	ncRNA:24   AGAUAUGGUAAUUUUCUAAGUUUG   1   ||||||||||||||||||*||||| targets:562   UCUAUACCAUUAAAAGAUCCAAAC   585 Target Full Sequence	1.5	Zea mays Sphingosine kinase 1 (LOC100383275), mRNA	NA	coding protein	psRNATarget
BT066756.2	ncRNA:24   AGAUAUGGUAAUUUUCUAAGUUUG   1   ||||||||||||||||||*||||| targets:562   UCUAUACCAUUAAAAGAUCCAAAC   585 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0062I06 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008653076.2	ncRNA:24   AGAUAUGGUAAUUUUCUAAGUUUG   1   ||||||||||||||||||*||||| targets:2199   UCUAUACCAUUAAAAGAUCCAAAC   2222 Target Full Sequence	1.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100279284), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001152305.1	ncRNA:24   AGAUAUGGUAAUUUUCUAAGUUUG   1   ||||||||||||||||||*||||| targets:2118   UCUAUACCAUUAAAAGAUCCAAAC   2141 Target Full Sequence	1.5	Zea mays Protein kinase superfamily protein (LOC100279284), mRNA	NA	coding protein	psRNATarget
BT053964.1	ncRNA:24   AGAUAUGGUAAUUUUCUAAGUUUG   1   ||||||||||||||||||*||||| targets:2118   UCUAUACCAUUAAAAGAUCCAAAC   2141 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0078N16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008653075.2	ncRNA:24   AGAUAUGGUAAUUUUCUAAGUUUG   1   ||||||||||||||||||*||||| targets:2199   UCUAUACCAUUAAAAGAUCCAAAC   2222 Target Full Sequence	1.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100279284), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU943177.1	ncRNA:24   AGAUAUGGUAAUUUUCUAAGUUUG   1   ||||||||||||||||||*||||| targets:901   UCUAUACCAUUAAAAGAUCCAAAC   924 Target Full Sequence	1.5	Zea mays clone 1578012 mRNA sequence	NA	coding protein	psRNATarget
XM_008672158.2	ncRNA:24   AGAUAUGGUAAUUUUCUAAGUUUG   1   ||||||||||||||||||*||||| targets:810   UCUAUACCAUUAAAAGAUCCAAAC   833 Target Full Sequence	1.5	PREDICTED: Zea mays mitochondrial amidoxime reducing component 2-like (LOC103647658), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU969943.1	ncRNA:24   AGAUAUGGUAAUUUUCUAAGUUUG   1   ||||||||||||||||||*||||| targets:765   UCUAUACCAUUAAAAGAUCCAAAC   788 Target Full Sequence	1.5	Zea mays clone 337662 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU977072.1	ncRNA:24   AGAUAUGGUAAUUUUCUAAGUUUG   1   ||||||||||||||||||*||||| targets:594   UCUAUACCAUUAAAAGAUCCAAAC   617 Target Full Sequence	1.5	Zea mays clone 998204 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT083634.2	ncRNA:24   AGAUAUGGUAAUUUUCUAAGUUUG   1   ||||||||||||||||||*||||= targets:514   UCUAUACCAUUAAAAGAUCCAAAU   537 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0021H22 mRNA, complete cds	NA	coding protein	psRNATarget
EU952212.1	ncRNA:24   AGAUAUGG-UAAUUUUCUAAGUUUG   1   |=||-|||-||*||||||||||||| targets:459   UUUA-ACCGAUAAAAAGAUUCAAAC   482 Target Full Sequence	3.0	Zea mays clone 1225710 phi-1-like phosphate-induced protein mRNA, complete cds	NA	coding protein	psRNATarget