ncRNA ID | novel_zma_miR9537 |
Species | Zea mays |
Class | miRNA |
Genome position | Chr1:59773916-59774116 [+] |
Reference genome | RefGen_v4 |
Source | SRR4237224 |
Length | 21 |
Mature sequence(if miRNA) | 1 - UUUGUUCUAAGUCAAACUUCU - 21 |
Stem-loop(if miRNA) |
--UU         U         CA  C    A CA        G          UG   CC   U    CAAAUAAUG    A   -G     U  AGA   AGU     UGUUCUAAG CAAACUUCU  AA UUUG C  AGUUUAUA AAAGAUGUAU  GCA  UAC AUAC         AAAU AGU  CAUUC CA   CAU   A     ||||||||| |||||||||  || |||| |  |||||||| ||||||||||  |||  ||| ||||         |||| |||  ||||| ||   |||     ACAGGAUUC GUUUGAAGG  UU AAAU G  UCAGAUAU UUUUUAUAUG  UGU  AUG UGUG         UUUA UCA  GUAAG GU   GUG   G UGUU         C         AA  C    A AG        G          GU   AA   U    --------A    A   AA     -  -AG   GUA |
Stem-loop sequence | UUUGUUCUAAGUCAAACUUCUCAAACUUUGACCAAGUUUAUAGAAAGAUGUAUUGGCACCUACUAUACCAAAUAAUGAAAUAAGUGCAUUCUCAAGACAUAGUAGAUGGUGGAUGGAAUGAAACUAAUUUAGUGUUGUAAAUGUUGGUAUAUUUUUGUAUAGACUGAGAUAAACUUAAGGAAGUUUGCCUUAGGACAUUGU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_020550362.1 |
|
1.5 | PREDICTED: Zea mays protein ALP1-like (LOC103650735), mRNA | NA | coding protein | psRNATarget |