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BaseInfo

ncRNA ID novel_zma_miR9537
Species Zea mays
Class miRNA
Genome position Chr1:59773916-59774116 [+]
Reference genome RefGen_v4
Source SRR4237224
Length 21
Mature sequence(if miRNA) 1 - UUUGUUCUAAGUCAAACUUCU - 21
Stem-loop(if miRNA) --UU         U         CA  C    A CA        G          UG   CC   U    CAAAUAAUG    A   -G     U  AGA   AGU
    UGUUCUAAG CAAACUUCU  AA UUUG C  AGUUUAUA AAAGAUGUAU  GCA  UAC AUAC         AAAU AGU  CAUUC CA   CAU   A
    ||||||||| |||||||||  || |||| |  |||||||| ||||||||||  |||  ||| ||||         |||| |||  ||||| ||   |||
    ACAGGAUUC GUUUGAAGG  UU AAAU G  UCAGAUAU UUUUUAUAUG  UGU  AUG UGUG         UUUA UCA  GUAAG GU   GUG   G
UGUU         C         AA  C    A AG        G          GU   AA   U    --------A    A   AA     -  -AG   GUA
Stem-loop sequence UUUGUUCUAAGUCAAACUUCUCAAACUUUGACCAAGUUUAUAGAAAGAUGUAUUGGCACCUACUAUACCAAAUAAUGAAAUAAGUGCAUUCUCAAGACAUAGUAGAUGGUGGAUGGAAUGAAACUAAUUUAGUGUUGUAAAUGUUGGUAUAUUUUUGUAUAGACUGAGAUAAACUUAAGGAAGUUUGCCUUAGGACAUUGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020550362.1
ncRNA:21   UCUUCAAACUGAAUCUUGUUU   1
  |||||||||||||||=|||||
targets:447   AGAAGUUUGACUUAGGACAAA   467

1.5 PREDICTED: Zea mays protein ALP1-like (LOC103650735), mRNA NA coding protein psRNATarget