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BaseInfo

ncRNA ID	novel_zma_miR9534
Species	Zea mays
Class	miRNA
Genome position	Chr1:51115957-51116130 [+]
Reference genome	RefGen_v4
Source	SRR4237224
Length	21
Mature sequence(if miRNA)	154 - AAACUUGAGAUGCUUUGACUC - 174
Stem-loop(if miRNA)	--                      C   A     ---G     U    -  G          U            CUAU  --AA    A   GUCAAAGCAUCUCAAGUUUGAC AAA UUAUA    AGAAU AUAA AA AUUUAUGAUA CAAAUAGGUAUU    GA    ACAU A   |||||||||||||||||||||| ||| |||||    ||||| |||| || |||||||||| ||||||||||||    ||    |||| U   CAGUUUCGUAGAGUUCAAACUG UUU GAUAU    UUUUA UAUU UU UAAAUACUAU GUUUAUUCAUAG    CU    UGUA U CU                      A   A     AUUA     U    A  G          -            UAAU  AAGA    A
Stem-loop sequence	GUCAAAGCAUCUCAAGUUUGACCAAAAUUAUAGAGAAUUAUAAAAGAUUUAUGAUAUCAAAUAGGUAUUCUAUGAAAACAUAAUUAAUGUAGAAUCUAAUGAUACUUAUUUGUAUCAUAAAUGUUAUUAUUAUUUUAUUAUAUAGAUUUAGUCAAACUUGAGAUGCUUUGACUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU972903.1	ncRNA:21   CUCAGUUUCGUAGAGUUCAAA   1   |||||||||*||||||||||| targets:1811   GAGUCAAAGGAUCUCAAGUUU   1831 Target Full Sequence	1.5	Zea mays clone 389868 mRNA sequence	NA	coding protein	psRNATarget
XM_020545186.1	ncRNA:21   CUCAGUUUCGUAGAGUUCAAA   1   ||||||||*|||||||||||| targets:323   GAGUCAAAUCAUCUCAAGUUU   343 Target Full Sequence	1.5	PREDICTED: Zea mays IQ domain-containing protein IQM5 (LOC103631766), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008671468.2	ncRNA:21   CUCAGUUUCGUAGAGUUCAAA   1   ||||||||*|||||||||||| targets:323   GAGUCAAAUCAUCUCAAGUUU   343 Target Full Sequence	1.5	PREDICTED: Zea mays IQ domain-containing protein IQM5 (LOC103631766), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020549059.1	ncRNA:21   CUCAGUUUCGUAGAGUUCAAA   1   ***|||*|||||||||||||| targets:383   ACUUCAUAGCAUCUCAAGUUU   403 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC109944335 (LOC109944335), partial mRNA	NA	coding protein	psRNATarget
XM_008673065.2	ncRNA:21   CUCAGUUUCGUAGAGUUCAAA   1   ***|||*|||||||||||||| targets:710   ACUUCAUAGCAUCUCAAGUUU   730 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103648631 (LOC103648631), mRNA	NA	coding protein	psRNATarget
XM_020543057.1	ncRNA:21   CUCAGUUUCGUAGAGUUCAAA   1   ***|||*|||||||||||||| targets:890   ACUUCAUAGCAUCUCAAGUUU   910 Target Full Sequence	2.0	PREDICTED: Zea mays cyclin-dependent kinase G-1-like (LOC103637130), mRNA	NA	coding protein	psRNATarget
XM_008676288.2	ncRNA:21   CUCAGUUUCGUAGAGUUCAAA   1   ***|||*|||||||||||||| targets:853   ACUUCAUAGCAUCUCAAGUUU   873 Target Full Sequence	2.0	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103650722), mRNA	NA	coding protein	psRNATarget
XM_008647279.2	ncRNA:21   CUCAGUUUCGUAGAGUUCAAA   1   ***|||*|||||||||||||| targets:872   ACUUCAUAGCAUCUCAAGUUU   892 Target Full Sequence	2.0	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103626928), mRNA	NA	coding protein	psRNATarget
XM_008681808.2	ncRNA:21   CUCAGUUUCGUAGAGUUCAAA   1   ***|||*|||||||||||||| targets:882   ACUUCAUAGCAUCUCAAGUUU   902 Target Full Sequence	2.0	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103654985), mRNA	NA	coding protein	psRNATarget