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BaseInfo

ncRNA ID	novel_zma_miR9531
Species	Zea mays
Class	miRNA
Genome position	Chr1:67223969-67224157 [-]
Reference genome	RefGen_v4
Source	SRR4237224
Length	24
Mature sequence(if miRNA)	1 - AGCUUUAGUACAUUCAAACACCCU - 24
Stem-loop(if miRNA)	--            C                   -        --------UUA     A ACAUCCAAACACUAGCUAAUAGUAAUAUUAGCUAUUUU   GGUGUUUGAAUG ACUAGAGUUAAUAGUUAGU GGCUAAAA           GUUUG G                                      U   |||||||||||| ||||||||||||||||||| ||||||||           ||||| |                                      A   CCACAAACUUAC UGAUUUCGAUUAUCAAUCA UCGAUUUU           UUAAU C                                      C UC            A                   A        UAGCCAUCACC     - GUUCUAUUGUUUAUCGAUCGAUUGAUAAUUGAUUAAAU
Stem-loop sequence	GGUGUUUGAAUGCACUAGAGUUAAUAGUUAGUGGCUAAAAUUAGUUUGAGACAUCCAAACACUAGCUAAUAGUAAUAUUAGCUAUUUUUACUAAAUUAGUUAAUAGUUAGCUAGCUAUUUGUUAUCUUGCUAAUUCCACUACCGAUUUUUAGCUAACUAACUAUUAGCUUUAGUACAUUCAAACACCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163393.1	ncRNA:24   UCCCACAAACUUACAUGAUUUCGA   1   =||||||||||||||||||=|||| targets:101   GGGGUGUUUGAAUGUACUAGAGCU   124 Target Full Sequence	1.5	Sequence 1057 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235062.1	ncRNA:24   UCCCACAAACUUACAUGAUUUCGA   1   =||||||||||||||||||=|||| targets:101   GGGGUGUUUGAAUGUACUAGAGCU   124 Target Full Sequence	1.5	Sequence 1057 from Patent EP2985353	NA	coding protein	psRNATarget
HI402932.1	ncRNA:24   UCCCACAAACUUACAUGAUUUCGA   1   =||||||||||||||||||=|||| targets:101   GGGGUGUUUGAAUGUACUAGAGCU   124 Target Full Sequence	1.5	Sequence 1057 from Patent EP2074227	NA	coding protein	psRNATarget
EU947773.1	ncRNA:24   UCCCACAAACUUACAUGAUUUCGA   1   =||||||||*|||||||||=|||| targets:268   GGGGUGUUUAAAUGUACUAGAGCU   291 Target Full Sequence	2.5	Zea mays clone 358284 mRNA sequence	NA	coding protein	psRNATarget
BT064892.1	ncRNA:24   UCCCACAAACUUACAUGAUUUCGA   1   =||||||||*|||||||||=|||| targets:269   GGGGUGUUUAAAUGUACUAGAGCU   292 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0339N24 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008646094.2	ncRNA:24   UCCCACAAACUUACAUGAUUUCGA   1   |***|||||||||||||||=|||| targets:607   ACUCUGUUUGAAUGUACUAGAGCU   630 Target Full Sequence	1.5	PREDICTED: Zea mays inactive poly [ADP-ribose] polymerase RCD1 (LOC103625711), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU943162.1	ncRNA:24   UCCCACAAACUUACAUGAUUUCGA   1   |**||||||*|||||||||*|||| targets:1575   AAUGUGUUUAAAUGUACUAUAGCU   1598 Target Full Sequence	2.5	Zea mays clone 1574300 mRNA sequence	NA	coding protein	psRNATarget