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BaseInfo

ncRNA ID	novel_zma_miR9527
Species	Zea mays
Class	miRNA
Genome position	Chr1:164020833-164020958 [-]
Reference genome	RefGen_v4
Source	SRR4237224
Length	24
Mature sequence(if miRNA)	1 - UUAGACAGCGAACCAAACAGGCCC - 24
Stem-loop(if miRNA)	--             -A  G      A         -- UGCCUAAGGUUAGUCGUUCGAAUUGA   GUCUGUUUGGUUU  UG CUAACU UGCCACACU  U                          A   |||||||||||||  || |||||| |||||||||  |   CGGACAAACCAAG  AC GAUUGA ACGGUGUGA  C                          G CC             CG  A      -         UA GGAUUGAAAAGACGGAUUCCAAUCAA
Stem-loop sequence	GUCUGUUUGGUUUAUGGCUAACUAUGCCACACUUUGCCUAAGGUUAGUCGUUCGAAUUGAAGAACUAACCUUAGGCAGAAAAGUUAGGCAUAGUGUGGCAAGUUAGACAGCGAACCAAACAGGCCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ057573.1	ncRNA:24   CCCGGACAAACCAAGCGACAGAUU   1   |||*|||||||||||||||||||| targets:234   GGGACUGUUUGGUUCGCUGUCUAA   257 Target Full Sequence	0.0	TSA: Zea mays contig58695, mRNA sequence	NA	coding protein	psRNATarget
LQ235498.1	ncRNA:24   CCCGGACAAACCAAGCGACAGAUU   1   |||=*||||||||||||||||||| targets:2   GGGUAUGUUUGGUUCGCUGUCUAA   25 Target Full Sequence	0.0	Sequence 1493 from Patent EP2985353	NA	coding protein	psRNATarget
JB163829.1	ncRNA:24   CCCGGACAAACCAAGCGACAGAUU   1   |||=*||||||||||||||||||| targets:2   GGGUAUGUUUGGUUCGCUGUCUAA   25 Target Full Sequence	0.0	Sequence 1493 from Patent EP2559767	NA	coding protein	psRNATarget
HI403368.1	ncRNA:24   CCCGGACAAACCAAGCGACAGAUU   1   |||=*||||||||||||||||||| targets:2   GGGUAUGUUUGGUUCGCUGUCUAA   25 Target Full Sequence	0.0	Sequence 1493 from Patent EP2074227	NA	coding protein	psRNATarget
BT033899.1	ncRNA:24   CCCGGACAAACCAAGCGACAGAUU   1   **||||||||||||=||||||||| targets:941   UAGCCUGUUUGGUUUGCUGUCUAA   964 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0124C10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137142.2	ncRNA:24   CCCGGACAAACCAAGCGACAGAUU   1   **||||||||||||=||||||||| targets:1005   UAGCCUGUUUGGUUUGCUGUCUAA   1028 Target Full Sequence	1.5	Zea mays hypothetical protein (LOC100191713), mRNA	NA	coding protein	psRNATarget
XM_008661761.2	ncRNA:24   CCCGGACAAACCAAGCGACAGAUU   1   ||*==||||||||||||||||||| targets:3579   GGAUUUGUUUGGUUCGCUGUCUAA   3602 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC103638977 (LOC103638977), mRNA	NA	coding protein	psRNATarget
EU945129.1	ncRNA:24   CCC---GGACAAACCAAGCGACAGAUU   1   *||---=|||||||||||||||||||| targets:528   AGGAUAUCUGUUUGGUUCGCUGUCUAA   554 Target Full Sequence	0.0	Zea mays clone 241976 mRNA sequence	NA	coding protein	psRNATarget
LQ235416.1	ncRNA:24   CCCGGACAAACCAAGCGACAGAUU   1   ||||*||||||||||||||*|||| targets:2   GGGCAUGUUUGGUUCGCUGCCUAA   25 Target Full Sequence	1.5	Sequence 1411 from Patent EP2985353	NA	coding protein	psRNATarget
JB163747.1	ncRNA:24   CCCGGACAAACCAAGCGACAGAUU   1   ||||*||||||||||||||*|||| targets:2   GGGCAUGUUUGGUUCGCUGCCUAA   25 Target Full Sequence	1.5	Sequence 1411 from Patent EP2559767	NA	coding protein	psRNATarget
HI403286.1	ncRNA:24   CCCGGACAAACCAAGCGACAGAUU   1   ||||*||||||||||||||*|||| targets:2   GGGCAUGUUUGGUUCGCUGCCUAA   25 Target Full Sequence	1.5	Sequence 1411 from Patent EP2074227	NA	coding protein	psRNATarget
BT038009.1	ncRNA:24   CCCGGACAAACCAAGCGACAGAUU   1   *|*||||||||||||||||*|||| targets:262   UGACCUGUUUGGUUCGCUGCCUAA   285 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0206M21 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008656231.2	ncRNA:24   CCCGGACAAACCAAGCGACAGAUU   1   *|*||||||||||||||||*|||| targets:5225   UGACCUGUUUGGUUCGCUGCCUAA   5248 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC100216556), transcript variant X1, mRNA	NA	coding protein	psRNATarget
AY107944.2	ncRNA:24   CCCGGACAAACCAAGCGACAGAUU   1   *|*|||*||||||||||||*|||| targets:841   AGACCUAUUUGGUUCGCUGCCUAA   864 Target Full Sequence	2.5	Zea mays PCO122092 mRNA sequence	NA	coding protein	psRNATarget