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BaseInfo

ncRNA ID	novel_zma_miR9515
Species	Zea mays
Class	miRNA
Genome position	Chr1:26700661-26700818 [+]
Reference genome	RefGen_v4
Source	SRR4237224
Length	24
Mature sequence(if miRNA)	135 - AUCCAACUUAUAUAAUCUAAGAGA - 158
Stem-loop(if miRNA)	--CCC  A                   GCC  ---   A   G   A        C       GAAC          A        UA AUUAUAUAAGUUGGAUUAU   GG   AAG GUA GAG GUAAAAUA CACUUUA    CACAAAUAAG UGA      || |||||||||||||||||||   ||   ||| ||| ||| |||||||| |||||||    |||||||||| ||A      AU UAAUAUAUUCAACCUAAUA   CC   UUC CAU UUC CAUUUUAU GUGAAAU    GUGUUUAUUC ACA AGAGA  C                   AUA  ACA   C   A   C        A       ACUA          A
Stem-loop sequence	CCCUAAAUUAUAUAAGUUGGAUUAUGCCGGAAGAGUAGGAGAGUAAAAUACCACUUUAGAACCACAAAUAAGAUGAAACAACUUAUUUGUGAUCAUAAAGUGAUAUUUUACCCUUAUACCCUUACACCAUAAUAAUCCAACUUAUAUAAUCUAAGAGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020541956.1	ncRNA:24   AGAGAA--UCUAAUAUAUUCAACCUA   1   |=||||--|||||||||||||||||| targets:513   UUUCUUCUAGAUUAUAUAAGUUGGAU   538 Target Full Sequence	2.5	PREDICTED: Zea mays U-box domain-containing protein 33-like (LOC109941340), mRNA	NA	coding protein	psRNATarget
BT087535.1	ncRNA:24   AGAGAAUCUAAUAUAUUCAACCUA   1   *|||*||||||||||||||||||| targets:51   CCUCCUAGAUUAUAUAAGUUGGAU   74 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0104B17 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020551678.1	ncRNA:24   AGAGAAUCUAAUAUAUUCAACCUA   1   *|||*|||||||||||||||||=| targets:561   CCUCCUAGAUUAUAUAAGUUGGGU   584 Target Full Sequence	1.5	PREDICTED: Zea mays RNA recognition motif containing protein (LOC100282725), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT061365.2	ncRNA:24   AGAGAAUCUAAUAUAUUCAACCUA   1   ||||*||||||||*|||||||||| targets:1044   UCUCCUAGAUUAUUUAAGUUGGAU   1067 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0139I13 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008668788.2	ncRNA:24   AGAGAAUCUAAUAUAUUCAACCUA   1   *||=*||||||||||||||||||* targets:1646   CCUUCUAGAUUAUAUAAGUUGGAC   1669 Target Full Sequence	1.0	PREDICTED: Zea mays putative tetraacyldisaccharide 4-kinase family protein (LOC100272815), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020546524.1	ncRNA:24   AGAGAAUCUAAUAUAUUCAACCUA   1   *||=*||||||||||||||||||* targets:1366   CCUUCUAGAUUAUAUAAGUUGGAC   1389 Target Full Sequence	1.0	PREDICTED: Zea mays probable tetraacyldisaccharide 4'-kinase, mitochondrial (LOC109943461), mRNA	NA	coding protein	psRNATarget
NM_001153863.1	ncRNA:24   AGA-G----AAUCUAAUAUAUUCAACCUA   1   |||-|----|*|||||||||||*|||||| targets:1228   UCUACCAAAUAAGAUUAUAUAAAUUGGAU   1256 Target Full Sequence	2.5	Zea mays uncharacterized LOC100280943 (pco148683), mRNA	NA	coding protein	psRNATarget
EU954804.1	ncRNA:24   AGA-G----AAUCUAAUAUAUUCAACCUA   1   |||-|----|*|||||||||||*|||||| targets:1228   UCUACCAAAUAAGAUUAUAUAAAUUGGAU   1256 Target Full Sequence	2.5	Zea mays clone 1484557 50S ribosomal protein L4 mRNA, complete cds	NA	coding protein	psRNATarget
AY108482.2	ncRNA:24   AGA-G----AAUCUAAUAUAUUCAACCUA   1   |||-|----|*|||||||||||*|||||| targets:1221   UCUACCAAAUAAGAUUAUAUAAAUUGGAU   1249 Target Full Sequence	2.5	Zea mays PCO148683 mRNA sequence	NA	coding protein	psRNATarget
BT017691.1	ncRNA:24   AGA-G----AAUCUAAUAUAUUCAACCUA   1   |||-|----|*|||||||||||*|||||| targets:1165   UCUACCAAAUAAGAUUAUAUAAAUUGGAU   1193 Target Full Sequence	2.5	Zea mays clone EL01N0444C11.c mRNA sequence	NA	coding protein	psRNATarget