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BaseInfo

ncRNA ID novel_zma_miR9511
Species Zea mays
Class miRNA
Genome position Chr9:158413191-158413393 [-]
Reference genome RefGen_v4
Source SRR4237224;SRR4237225
Length 21
Mature sequence(if miRNA) 1 - AUGUUAGCAUGUUAGUACCCU - 21
Stem-loop(if miRNA) --GA     -   U                     C  AACCAC                CAAUCUCACCUCCUCUCA  ---   UUUUCUAAAGAACCCCUAUGUUUUUU
    UGCUA CAU CUAAUAUCAAAUCUUGUCUAU GG      UAUCUACGGCUGAGUG                  GA   CUA                          A
    ||||| ||| ||||||||||||||||||||| ||      ||||||||||||||||                  ||   |||
    AUGAU GUA GAUUGUAGUUUAGAAUAGGUA CC      GUAGAUGCUGACUCAC                  CG   AGG                          U
UCCC     U   C                     A  GAGAUA                -----------------U  UCA   UGAACCCCUGCCUGUGCUAGAUAAGA
Stem-loop sequence GAUGCUACAUUCUAAUAUCAAAUCUUGUCUAUCGGAACCACUAUCUACGGCUGAGUGCAAUCUCACCUCCUCUCAGACUAUUUUCUAAAGAACCCCUAUGUUUUUUAUAGAAUAGAUCGUGUCCGUCCCCAAGUGGAACUGCUCACUCAGUCGUAGAUGAUAGAGCCAAUGGAUAAGAUUUGAUGUUAGCAUGUUAGUACCCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT016910.1
ncRNA:21   UCCCAUGAUUGUACGAUUGUA   1
  |*|||*|*|||||||||||||
targets:804   AUGGUUCAAACAUGCUAACAU   824

2.0 Zea mays clone Contig743 mRNA sequence NA coding protein psRNATarget
EZ058715.1
ncRNA:21   UCCCAUGAUUGUACGAUUGUA   1
  |*|||*|*|||||||||||||
targets:721   AUGGUUCAAACAUGCUAACAU   741

2.0 TSA: Zea mays contig59837, mRNA sequence NA coding protein psRNATarget