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BaseInfo

ncRNA ID	novel_zma_miR9504
Species	Zea mays
Class	miRNA
Genome position	Chr9:1564130-1564262 [+]
Reference genome	RefGen_v4
Source	SRR4237224
Length	24
Mature sequence(if miRNA)	110 - GGUUGGAUCAUGAUAUGAUAGGCU - 133
Stem-loop(if miRNA)	UUUA   ---G                 -GA        U   ----     --- UGAGUUUUUUUAAUAA     CUA    AUCGUGAUUUAACUGUA   UAUAAUUA GGU    UUGUU   A                A     |||    |||||||||||||||||   |||||||| |||    |||||   |     GAU    UAGUACUAGGUUGGUAU   GUGUUAAU UGU    UUGGA   C                U -UCG   AGUA                 AUA        -   UAAU     AAG AGUGGUCUAAUACAUC
Stem-loop sequence	UUUACUAGAUCGUGAUUUAACUGUAGAUAUAAUUAUGGUUUGUUAUGAGUUUUUUUAAUAAAUCUACAUAAUCUGGUGACGAAAGGUUUAAUUGUUAAUUGUGAUAUAUGGUUGGAUCAUGAUAUGAUAGGCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI403317.1	ncRNA:24   UCGGAUAGUAUAGUACUAGGUUGG   1   |*||-||=||||=||||||||||| targets:45   AUCC-AUUAUAUUAUGAUCCAACC   67 Target Full Sequence	2.5	Sequence 1442 from Patent EP2074227	NA	coding protein	psRNATarget
JB163778.1	ncRNA:24   UCGGAUAGUAUAGUACUAGGUUGG   1   |*||-||=||||=||||||||||| targets:45   AUCC-AUUAUAUUAUGAUCCAACC   67 Target Full Sequence	2.5	Sequence 1442 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235447.1	ncRNA:24   UCGGAUAGUAUAGUACUAGGUUGG   1   |*||-||=||||=||||||||||| targets:45   AUCC-AUUAUAUUAUGAUCCAACC   67 Target Full Sequence	2.5	Sequence 1442 from Patent EP2985353	NA	coding protein	psRNATarget
JB163734.1	ncRNA:24   UCGGAUAGUAUAGUACUAGGUUGG   1   |*=|-||=|||||=|||||||||| targets:45   AUUC-AUUAUAUCGUGAUCCAACC   67 Target Full Sequence	2.5	Sequence 1398 from Patent EP2559767	NA	coding protein	psRNATarget
HI403273.1	ncRNA:24   UCGGAUAGUAUAGUACUAGGUUGG   1   |*=|-||=|||||=|||||||||| targets:45   AUUC-AUUAUAUCGUGAUCCAACC   67 Target Full Sequence	2.5	Sequence 1398 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235403.1	ncRNA:24   UCGGAUAGUAUAGUACUAGGUUGG   1   |*=|-||=|||||=|||||||||| targets:45   AUUC-AUUAUAUCGUGAUCCAACC   67 Target Full Sequence	2.5	Sequence 1398 from Patent EP2985353	NA	coding protein	psRNATarget
LQ241182.1	ncRNA:24   UCGGAUAGUAUAGUACUAGGUUGG   1   |*||-||=|*|||||||||||||| targets:53   AUCC-AUUAGAUCAUGAUCCAACC   75 Target Full Sequence	2.0	Sequence 7177 from Patent EP2985353	NA	coding protein	psRNATarget
JB169513.1	ncRNA:24   UCGGAUAGUAUAGUACUAGGUUGG   1   |*||-||=|*|||||||||||||| targets:53   AUCC-AUUAGAUCAUGAUCCAACC   75 Target Full Sequence	2.0	Sequence 7177 from Patent EP2559767	NA	coding protein	psRNATarget
HI409052.1	ncRNA:24   UCGGAUAGUAUAGUACUAGGUUGG   1   |*||-||=|*|||||||||||||| targets:53   AUCC-AUUAGAUCAUGAUCCAACC   75 Target Full Sequence	2.0	Sequence 7177 from Patent EP2074227	NA	coding protein	psRNATarget
EU972964.1	ncRNA:24   UCGGAUAGUAUAGUACUAGGUUGG   1   |*||-||=|*|||||||||||||| targets:2078   AUCC-AUUAGAUCAUGAUCCAACC   2100 Target Full Sequence	2.0	Zea mays clone 390894 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001151629.1	ncRNA:24   UCGGAUAGUAUAGUACUAGGUUGG   1   |*||-||=|*|||||||||||||| targets:2078   AUCC-AUUAGAUCAUGAUCCAACC   2100 Target Full Sequence	2.0	Zea mays uncharacterized LOC100278316 (si946092e03), mRNA	NA	coding protein	psRNATarget