Search result

BaseInfo

ncRNA ID	novel_zma_miR9498
Species	Zea mays
Class	miRNA
Genome position	Chr8:136352281-136352336 [+]
Reference genome	RefGen_v4
Source	SRR4237224
Length	24
Mature sequence(if miRNA)	1 - AAAUAGCUUCUUUGCCGAGUGUCA - 24
Stem-loop(if miRNA)	---AAAU    U             CAAA        AGCU CUUUGCCGAGUGU    U        |||| |||||||||||||        UCGA GAAAUGGCUCACA    A CGUUUCU    -             AUAU
Stem-loop sequence	AAAUAGCUUCUUUGCCGAGUGUCAAAUAUAUAACACUCGGUAAAGAGCUUCUUUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU952231.1	ncRNA:24   ACUGUGAGCCGUUUCUUCGAU-AAA   1   *||||||||||||||||||||-||| targets:1508   CGACACUCGGCAAAGAAGCUACUUU   1532 Target Full Sequence	3.0	Zea mays clone 1234152 mRNA sequence	NA	coding protein	psRNATarget
EU951420.1	ncRNA:24   AC--UGUGAGCCGUUUCUUCGA-UAAA   1   ||--||||||||||||||||||-|||| targets:155   UGGAACACUCGGCAAAGAAGCUUAUUU   181 Target Full Sequence	3.0	Zea mays clone 701735 mRNA sequence	NA	coding protein	psRNATarget
HI406693.1	ncRNA:24   ACUGUGAGCCGUUUCUUCGAUAAA   1   *|=|||||||||||||||||*||| targets:10   GGGCACUCGGCAAAGAAGCUCUUU   33 Target Full Sequence	1.5	Sequence 4818 from Patent EP2074227	NA	coding protein	psRNATarget
JB167154.1	ncRNA:24   ACUGUGAGCCGUUUCUUCGAUAAA   1   *|=|||||||||||||||||*||| targets:10   GGGCACUCGGCAAAGAAGCUCUUU   33 Target Full Sequence	1.5	Sequence 4818 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238823.1	ncRNA:24   ACUGUGAGCCGUUUCUUCGAUAAA   1   *|=|||||||||||||||||*||| targets:10   GGGCACUCGGCAAAGAAGCUCUUU   33 Target Full Sequence	1.5	Sequence 4818 from Patent EP2985353	NA	coding protein	psRNATarget
BT042352.1	ncRNA:24   ACUGUGAGCCGUUUCUUCGAUAAA   1   ||-|||||||||||||||||*||| targets:1246   UG-CACUCGGCAAAGAAGCUCUUU   1268 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0207J05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148473.2	ncRNA:24   ACUGUGAGCCGUUUCUUCGAUAAA   1   ||-|||||||||||||||||*||| targets:1296   UG-CACUCGGCAAAGAAGCUCUUU   1318 Target Full Sequence	1.5	Zea mays Protein CHLORORESPIRATORY REDUCTION 6 chloroplastic (si707021b11), mRNA	NA	coding protein	psRNATarget
NM_001111768.2	ncRNA:24   ACUGUGAGCCGUUUCUUCGAUAAA   1   **||=|||*||||||||||||||* targets:2512   AAACGCUCUGCAAAGAAGCUAUUA   2535 Target Full Sequence	2.0	Zea mays MAP kinase6 (mpk6), mRNA	NA	coding protein	psRNATarget
XM_020539298.1	ncRNA:24   ACUG-UGAGCCGUUUCUUCGAUAAA   1   *|=|-=|||*||||=|||||||||| targets:1067   AGGCUGCUCUGCAAGGAAGCUAUUU   1091 Target Full Sequence	2.5	PREDICTED: Zea mays wall-associated receptor kinase 5-like (LOC103629517), mRNA	NA	coding protein	psRNATarget
BT069502.1	ncRNA:24   ACUGUGAGCCGUUUCUUCGAUAAA   1   *|*==|||*||||=|||||||||| targets:1044   GGUUGCUCUGCAAGGAAGCUAUUU   1067 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0149G24 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176783.1	ncRNA:24   ACUGUGAGCCGUUUCUUCGAUAAA   1   *|*==|||*||||=|||||||||| targets:1044   GGUUGCUCUGCAAGGAAGCUAUUU   1067 Target Full Sequence	2.5	Zea mays Protein kinase superfamily protein (LOC100384211), mRNA	NA	coding protein	psRNATarget