ncRNA ID | novel_zma_miR9495 |
Species | Zea mays |
Class | miRNA |
Genome position | Chr8:6300682-6300886 [+] |
Reference genome | RefGen_v4 |
Source | SRR4237224;SRR4237225;SRR4237226;SRR4237227 |
Length | 21 |
Mature sequence(if miRNA) | 185 - AGCACGGUACCCCUUUGAGCA - 205 |
Stem-loop(if miRNA) |
--   C       GU                          A         A  AA    C       AUA          CG          C    GAGGG   CUC AAGGGGU  CGUGCUCACAUGCACAUUUUAAAUCU GGACAUCCA CU  CAUC AACGGUA   GCUAAUUUUA  AAUAACCCCU CCAC     G   ||| |||||||  |||||||||||||||||||||||||| ||||||||| ||  |||| |||||||   ||||||||||  |||||||||| ||||   GAG UUCCCCA  GCACGAGUGUACGUGUAAAAUUUAGA CUUGUAGGU GA  GUAG UUGUCGU   UGGUUAAAAU  UUAUUGGGGA GGUG     A AC   U       UG                          C         A  AC    A       -CG          AU          C    GAGGG |
Stem-loop sequence | CUCCAAGGGGUGUCGUGCUCACAUGCACAUUUUAAAUCUAGGACAUCCAACUAACAUCCAACGGUAAUAGCUAAUUUUACGAAUAACCCCUCCCACGAGGGGAGGGAGGUGGCAGGGGUUAUUUAUAAAAUUGGUGCUGCUGUUAGAUGCAAGAUGGAUGUUCCAGAUUUAAAAUGUGCAUGUGAGCACGGUACCCCUUUGAGCA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_008661793.2 |
|
1.5 | PREDICTED: Zea mays uncharacterized LOC103639018 (LOC103639018), transcript variant X1, mRNA | NA | coding protein | psRNATarget | |||||||||
XM_008661794.2 |
|
1.5 | PREDICTED: Zea mays uncharacterized LOC103639018 (LOC103639018), transcript variant X2, mRNA | NA | coding protein | psRNATarget |