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BaseInfo

ncRNA ID novel_zma_miR9495
Species Zea mays
Class miRNA
Genome position Chr8:6300682-6300886 [+]
Reference genome RefGen_v4
Source SRR4237224;SRR4237225;SRR4237226;SRR4237227
Length 21
Mature sequence(if miRNA) 185 - AGCACGGUACCCCUUUGAGCA - 205
Stem-loop(if miRNA) --   C       GU                          A         A  AA    C       AUA          CG          C    GAGGG
  CUC AAGGGGU  CGUGCUCACAUGCACAUUUUAAAUCU GGACAUCCA CU  CAUC AACGGUA   GCUAAUUUUA  AAUAACCCCU CCAC     G
  ||| |||||||  |||||||||||||||||||||||||| ||||||||| ||  |||| |||||||   ||||||||||  |||||||||| ||||
  GAG UUCCCCA  GCACGAGUGUACGUGUAAAAUUUAGA CUUGUAGGU GA  GUAG UUGUCGU   UGGUUAAAAU  UUAUUGGGGA GGUG     A
AC   U       UG                          C         A  AC    A       -CG          AU          C    GAGGG
Stem-loop sequence CUCCAAGGGGUGUCGUGCUCACAUGCACAUUUUAAAUCUAGGACAUCCAACUAACAUCCAACGGUAAUAGCUAAUUUUACGAAUAACCCCUCCCACGAGGGGAGGGAGGUGGCAGGGGUUAUUUAUAAAAUUGGUGCUGCUGUUAGAUGCAAGAUGGAUGUUCCAGAUUUAAAAUGUGCAUGUGAGCACGGUACCCCUUUGAGCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008661793.2
ncRNA:21   ACGAGUUUCCCCAUGGCACGA   1
  |||||||||||||||*|||||
targets:885   UGCUCAAAGGGGUACGGUGCU   905

1.5 PREDICTED: Zea mays uncharacterized LOC103639018 (LOC103639018), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008661794.2
ncRNA:21   ACGAGUUUCCCCAUGGCACGA   1
  |||||||||||||||*|||||
targets:894   UGCUCAAAGGGGUACGGUGCU   914

1.5 PREDICTED: Zea mays uncharacterized LOC103639018 (LOC103639018), transcript variant X2, mRNA NA coding protein psRNATarget