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BaseInfo

ncRNA ID	novel_zma_miR9494
Species	Zea mays
Class	miRNA
Genome position	Chr8:175558-175646 [-]
Reference genome	RefGen_v4
Source	SRR4237224
Length	24
Mature sequence(if miRNA)	1 - ACACUCGGCAAAGAAACUCCUUGC - 24
Stem-loop(if miRNA)	--     AGC               AAAAA    C  A         AAGGA   UCUUUGCCGAGUGUU     ACAC UG CAAAGAA   |||||   |||||||||||||||     |||| || ||||||A   UUCCU   AGAAACGGCUCACAA     UGUG GC GUUUUUC CG     CAA               AAAAC    A  C
Stem-loop sequence	AAGGAAGCUCUUUGCCGAGUGUUAAAAAACACCUGACAAAGAAACUUUUUGCCGAGUGUCAAAAAACACUCGGCAAAGAAACUCCUUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT055423.1	ncRNA:24   CGUUCCUCAAAGAAACGGCUCACA   1   ||||**||||||||||=||||||| targets:78   GCAAAAAGUUUCUUUGUCGAGUGU   101 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0179M04 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165647.1	ncRNA:24   CGUUCCUCAAAGAAACGGCUCACA   1   ||||**||||||||||=||||||| targets:78   GCAAAAAGUUUCUUUGUCGAGUGU   101 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304195 (LOC100304195), mRNA	NA	coding protein	psRNATarget
NM_001152461.1	ncRNA:24   CGUUCCUCAAAGAAACGGCUCACA   1   ||||**||||||||||=||||||| targets:2097   GCAAAAAGUUUCUUUGUCGAGUGU   2120 Target Full Sequence	2.5	Zea mays uncharacterized LOC100279456 (IDP836), mRNA	NA	coding protein	psRNATarget
BT054268.1	ncRNA:24   CGUUCCUCAAAGAAACGGCUCACA   1   ||||**||||||||||=||||||| targets:2097   GCAAAAAGUUUCUUUGUCGAGUGU   2120 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0206G23 mRNA, complete cds	NA	coding protein	psRNATarget
JB167154.1	ncRNA:24   CGUUCCUCAAAGAAACGGCUCACA   1   ||||*||***|||||||||||||| targets:19   GCAAAGAAGCUCUUUGCCGAGUGU   42 Target Full Sequence	3.0	Sequence 4818 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238823.1	ncRNA:24   CGUUCCUCAAAGAAACGGCUCACA   1   ||||*||***|||||||||||||| targets:19   GCAAAGAAGCUCUUUGCCGAGUGU   42 Target Full Sequence	3.0	Sequence 4818 from Patent EP2985353	NA	coding protein	psRNATarget
HI406693.1	ncRNA:24   CGUUCCUCAAAGAAACGGCUCACA   1   ||||*||***|||||||||||||| targets:19   GCAAAGAAGCUCUUUGCCGAGUGU   42 Target Full Sequence	3.0	Sequence 4818 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008665669.2	ncRNA:24   CGUUCCUCAAAGAAACGGCUCACA   1   *||=*||**||||||||||||||* targets:2093   CCAGAGACGUUCUUUGCCGAGUGA   2116 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC103642387 (LOC103642387), mRNA	NA	coding protein	psRNATarget