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BaseInfo

ncRNA ID novel_zma_miR9483
Species Zea mays
Class miRNA
Genome position Chr7:178592496-178592630 [+]
Reference genome RefGen_v4
Source SRR4237224
Length 24
Mature sequence(if miRNA) 1 - AAACCAGACUGUUUGCAGCCCCUC - 24
Stem-loop(if miRNA) --    C          C    - -      A       AA      C  C        -  AACAAUA
  AAAC AGACUGUUUG AGCC C CUCACA AAAGGAG  UAGAUC CA CUGCAGGU GC       C
  |||| |||||||||| |||| | |||||| |||||||  |||||| || |||||||| ||       A
  UUUG UCUGACAAAC UCGG G GAGUGU UUUCCUC  AUCUGG GU GACGUCCA UG       A
CA    A          A    A A      C       -C      A  A        G  CAAAACU
Stem-loop sequence AAACCAGACUGUUUGCAGCCCCUCACAAAAAGGAGAAUAGAUCCCACCUGCAGGUGCAACAAUACAAUCAAAACGUGACCUGCAGAUGAGGUCUACCUCCUUUCUGUGAGAGAGGCUACAAACAGUCUAGUUUAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI403422.1
ncRNA:24   CUCCCCGACGUUUGUCAGACCAAA   1
  ||||||||||||||||||||||||
targets:112   GAGGGGCUGCAAACAGUCUGGUUU   135

0.0 Sequence 1547 from Patent EP2074227 NA coding protein psRNATarget
JB163883.1
ncRNA:24   CUCCCCGACGUUUGUCAGACCAAA   1
  ||||||||||||||||||||||||
targets:112   GAGGGGCUGCAAACAGUCUGGUUU   135

0.0 Sequence 1547 from Patent EP2559767 NA coding protein psRNATarget
LQ235552.1
ncRNA:24   CUCCCCGACGUUUGUCAGACCAAA   1
  ||||||||||||||||||||||||
targets:112   GAGGGGCUGCAAACAGUCUGGUUU   135

0.0 Sequence 1547 from Patent EP2985353 NA coding protein psRNATarget
EZ073016.1
ncRNA:24   CUCCCCGACGUUUGUCAGACCAAA   1
  ||||||||||||||||*|||||||
targets:49   GAGGGGCUGCAAACAGCCUGGUUU   72

1.5 TSA: Zea mays contig08653, mRNA sequence NA coding protein psRNATarget
LQ235473.1
ncRNA:24   CUCCCCGACGUUUGUCAGACCAAA   1
  ||||||||||||||||*|||||||
targets:173   GAGGGGCUGCAAACAGCCUGGUUU   196

1.5 Sequence 1468 from Patent EP2985353 NA coding protein psRNATarget
JB163804.1
ncRNA:24   CUCCCCGACGUUUGUCAGACCAAA   1
  ||||||||||||||||*|||||||
targets:173   GAGGGGCUGCAAACAGCCUGGUUU   196

1.5 Sequence 1468 from Patent EP2559767 NA coding protein psRNATarget
HI403343.1
ncRNA:24   CUCCCCGACGUUUGUCAGACCAAA   1
  ||||||||||||||||*|||||||
targets:173   GAGGGGCUGCAAACAGCCUGGUUU   196

1.5 Sequence 1468 from Patent EP2074227 NA coding protein psRNATarget
EU968721.1
ncRNA:24   CUCCCCGACGUUUGUCAGACCAAA   1
  ||||||||*|||||||||||||||
targets:1038   GAGGGGCUACAAACAGUCUGGUUU   1061

1.0 Zea mays clone 323697 tyrosine specific protein phosphatase family protein mRNA, complete cds NA coding protein psRNATarget
XM_020547635.1
ncRNA:24   CUCCCCGACGUUUGUCAGACCAAA   1
  |||||||||||||||*||||||||
targets:2554   GAGGGGCUGCAAACACUCUGGUUU   2577

1.5 PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X7, mRNA NA coding protein psRNATarget
AY111544.1
ncRNA:24   CUCCCCGACGUUUGUCAGACCAAA   1
  |||||||||||||||*||||||||
targets:978   GAGGGGCUGCAAACACUCUGGUUU   1001

1.5 Zea mays CL947_1 mRNA sequence NA coding protein psRNATarget
X55314.1
ncRNA:24   CUCCCCGACGUUUGUCAGACCAAA   1
  |||||||||||||||*||||||||
targets:1022   GAGGGGCUGCAAACACUCUGGUUU   1045

1.5 Zea mays A2 gene NA coding protein psRNATarget
XM_020547631.1
ncRNA:24   CUCCCCGACGUUUGUCAGACCAAA   1
  |||||||||||||||*||||||||
targets:3454   GAGGGGCUGCAAACACUCUGGUUU   3477

1.5 PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020547630.1
ncRNA:24   CUCCCCGACGUUUGUCAGACCAAA   1
  |||||||||||||||*||||||||
targets:3471   GAGGGGCUGCAAACACUCUGGUUU   3494

1.5 PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020547634.1
ncRNA:24   CUCCCCGACGUUUGUCAGACCAAA   1
  |||||||||||||||*||||||||
targets:4329   GAGGGGCUGCAAACACUCUGGUUU   4352

1.5 PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X6, mRNA NA coding protein psRNATarget
XM_020547633.1
ncRNA:24   CUCCCCGACGUUUGUCAGACCAAA   1
  |||||||||||||||*||||||||
targets:4332   GAGGGGCUGCAAACACUCUGGUUU   4355

1.5 PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020547632.1
ncRNA:24   CUCCCCGACGUUUGUCAGACCAAA   1
  |||||||||||||||*||||||||
targets:4350   GAGGGGCUGCAAACACUCUGGUUU   4373

1.5 PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020547629.1
ncRNA:24   CUCCCCGACGUUUGUCAGACCAAA   1
  |||||||||||||||*||||||||
targets:4352   GAGGGGCUGCAAACACUCUGGUUU   4375

1.5 PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008653247.2
ncRNA:24   CUCCCCGACGUUUGUCAGACCAAA   1
  *|||||||||||||||*|||||||
targets:134   UAGGGGCUGCAAACAGCCUGGUUU   157

1.5 PREDICTED: Zea mays 50S ribosomal protein L18 (LOC103631773), mRNA NA coding protein psRNATarget
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