Search result

BaseInfo

ncRNA ID	novel_zma_miR9480
Species	Zea mays
Class	miRNA
Genome position	Chr7:145651810-145651967 [+]
Reference genome	RefGen_v4
Source	SRR4237224
Length	24
Mature sequence(if miRNA)	135 - AAACAGCCUGGUUUGCAGCCGGAC - 158
Stem-loop(if miRNA)	--                                                 C             CCACCAG     GU   CCGGCUGCAAAUCAGGCUGUUUGCAGCCCCUCACAAAAAGGAGGAUAGG CCCACCUGCAGGU       AUAAC  U   ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||       |||||   GGCCGACGUUUGGUCCGACAAACGUCGGGGAGUGUUUUUCCUCUUAUCC GGGUGGGCGUCCA       UGUUG  U CA                                                 A             UUUAUUA     AU
Stem-loop sequence	CCGGCUGCAAAUCAGGCUGUUUGCAGCCCCUCACAAAAAGGAGGAUAGGCCCCACCUGCAGGUCCACCAGAUAACGUUUUAGUUGUAUUAUUUACCUGCGGGUGGGACCUAUUCUCCUUUUUGUGAGGGGCUGCAAACAGCCUGGUUUGCAGCCGGAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020547144.1	ncRNA:24   CAGGCCGACGUUUGGUCCGACAAA   1   |*|||||||||||||||||||||| targets:125   GCCCGGCUGCAAACCAGGCUGUUU   148 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC103636662 (LOC103636662), mRNA	NA	coding protein	psRNATarget
XM_008653247.2	ncRNA:24   CAGGCCGACGUUUGGUCCGACAAA   1   |*||||||||||||=||||||||| targets:8   GCCCGGCUGCAAACUAGGCUGUUU   31 Target Full Sequence	1.5	PREDICTED: Zea mays 50S ribosomal protein L18 (LOC103631773), mRNA	NA	coding protein	psRNATarget
EU972005.1	ncRNA:24   CAGGCCGACGUUUGGUCCGACAAA   1   |**|*||||||||||||*|||||| targets:661   GGACUGCUGCAAACCAGACUGUUU   684 Target Full Sequence	1.5	Zea mays clone 373333 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001151499.1	ncRNA:24   CAGGCCGACGUUUGGUCCGACAAA   1   |**|*||||||||||||*|||||| targets:661   GGACUGCUGCAAACCAGACUGUUU   684 Target Full Sequence	1.5	Zea mays uncharacterized LOC100278117 (LOC100278117), mRNA	NA	coding protein	psRNATarget
AF545812.1	ncRNA:24   CAGGCCGACGUUUGGUCCGACAAA   1   ****||||||||||*||||||||* targets:312   AGAAGGCUGCAAACGAGGCUGUUG   335 Target Full Sequence	2.5	Zea mays global transcription factor group C 102 (gtc102) mRNA, complete cds	NA	coding protein	psRNATarget
NM_001112087.2	ncRNA:24   CAGGCCGACGUUUGGUCCGACAAA   1   ****||||||||||*||||||||* targets:307   AGAAGGCUGCAAACGAGGCUGUUG   330 Target Full Sequence	2.5	Zea mays global transcription factor C (Spt16) (gtc102), mRNA	NA	coding protein	psRNATarget