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BaseInfo

ncRNA ID	novel_zma_miR9476
Species	Zea mays
Class	miRNA
Genome position	Chr7:58223170-58223297 [+]
Reference genome	RefGen_v4
Source	SRR4237224
Length	24
Mature sequence(if miRNA)	105 - GAGGUAACGAACCAAACAUGCCCU - 128
Stem-loop(if miRNA)	--   C            G   AACUG               -  GGUUAGUCGUUCAAAUUGA   GGU UGUUUGGUUCGU GCU     UGCCACACUUUGCCU AA                   A   ||| |||||||||||| |||     ||||||||||||||| ||                   A   CCG ACAAACCAAGCA UGG     AUGGUGUGAAACGGA UG                   A UC   U            A   AGUUA               G  AAAAGACGGAUUCCAAUCA
Stem-loop sequence	GGUCUGUUUGGUUCGUGGCUAACUGUGCCACACUUUGCCUAAGGUUAGUCGUUCAAAUUGAAAAACUAACCUUAGGCAGAAAAGUGAGGCAAAGUGUGGUAAUUGAGGUAACGAACCAAACAUGCCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020545710.1	ncRNA:24   UCCCGUACAAACCAAGCAAUGGAG   1   |||||||||||||||||||||||| targets:2559   AGGGCAUGUUUGGUUCGUUACCUC   2582 Target Full Sequence	0.0	PREDICTED: Zea mays CRM-domain containing factor CFM3, chloroplastic/mitochondrial (LOC103642614), mRNA	NA	coding protein	psRNATarget
XM_008654136.2	ncRNA:24   UCCCGUACAAACCAAGCAAUGGAG   1   |*|||||||||||||||||||||| targets:1304   AAGGCAUGUUUGGUUCGUUACCUC   1327 Target Full Sequence	0.0	PREDICTED: Zea mays clathrin light chain 3 (LOC103632305), mRNA	NA	coding protein	psRNATarget
EU961043.1	ncRNA:24   UCCCGUACAAACCAAGCAAUGGAG   1   =|||||||||||||||||||||*| targets:810   GGGGCAUGUUUGGUUCGUUACCAC   833 Target Full Sequence	1.5	Zea mays clone 230664 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT068336.1	ncRNA:24   UCCCGUACAAACCAAGCAAUGGAG   1   =||||||||||||||||*|||||= targets:821   GGGGCAUGUUUGGUUCGAUACCUU   844 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0119L20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148844.1	ncRNA:24   UCCCGUACAAACCAAGCAAUGGAG   1   |*|||||||||||*|||||||||* targets:1540   AAGGCAUGUUUGGCUCGUUACCUA   1563 Target Full Sequence	2.5	Zea mays uncharacterized LOC100274485 (LOC100274485), mRNA	NA	coding protein	psRNATarget
BT043169.1	ncRNA:24   UCCCGUACAAACCAAGCAAUGGAG   1   |*|||||||||||*|||||||||* targets:1540   AAGGCAUGUUUGGCUCGUUACCUA   1563 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0116O04 mRNA, complete cds	NA	coding protein	psRNATarget