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BaseInfo

ncRNA ID	novel_zma_miR9470
Species	Zea mays
Class	miRNA
Genome position	Chr7:17488362-17488424 [-]
Reference genome	RefGen_v4
Source	SRR4237224
Length	23
Mature sequence(if miRNA)	41 - UUUGUCAUUAUCAUUUGUGGGCU - 63
Stem-loop(if miRNA)	--      AU   C           U  U  AU   UUUGUC  UAU AUUUGUGGGCU CG UA  A   ||||||  ||| ||||||||||| || ||   AAACAG  AUA UAAACACCUGG GC AU  U AG      --   U           -  U  CG
Stem-loop sequence	UUUGUCAUUAUCAUUUGUGGGCUUCGUUAAUAUGCUAUCGGGUCCACAAAUUAUAGACAAAGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AY111885.1	ncRNA:23   UCGGGUGUUUACUAUUACUGUUU   1   ||||||||||||||||||||||| targets:195   AGCCCACAAAUGAUAAUGACAAA   217 Target Full Sequence	0.0	Zea mays CL9981_2 mRNA sequence	NA	coding protein	psRNATarget
JB166322.1	ncRNA:23   UCGGGUGUUUACUAUUACUGUUU   1   ||||||||||||||||||=|||| targets:116   AGCCCACAAAUGAUAAUGGCAAA   138 Target Full Sequence	1.5	Sequence 3986 from Patent EP2559767	NA	coding protein	psRNATarget
HI405861.1	ncRNA:23   UCGGGUGUUUACUAUUACUGUUU   1   ||||||||||||||||||=|||| targets:116   AGCCCACAAAUGAUAAUGGCAAA   138 Target Full Sequence	1.5	Sequence 3986 from Patent EP2074227	NA	coding protein	psRNATarget
LQ237991.1	ncRNA:23   UCGGGUGUUUACUAUUACUGUUU   1   ||||||||||||||||||=|||| targets:116   AGCCCACAAAUGAUAAUGGCAAA   138 Target Full Sequence	1.5	Sequence 3986 from Patent EP2985353	NA	coding protein	psRNATarget
NM_001175838.1	ncRNA:23   UCGGGUGUUUACUAUUACUGUUU   1   ||||||||||||||||||=|||| targets:1230   AGCCCACAAAUGAUAAUGGCAAA   1252 Target Full Sequence	1.5	Zea mays uncharacterized LOC100383173 (LOC100383173), mRNA	NA	coding protein	psRNATarget
BT066458.1	ncRNA:23   UCGGGUGUUUACUAUUACUGUUU   1   ||||||||||||||||||=|||| targets:1230   AGCCCACAAAUGAUAAUGGCAAA   1252 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0008C14 mRNA, complete cds	NA	coding protein	psRNATarget
EU969281.1	ncRNA:23   UCGGGUGUUUACUAUUACUGUUU   1   ||||||||||||||||||=|||| targets:473   AGCCCACAAAUGAUAAUGGCAAA   495 Target Full Sequence	1.5	Zea mays clone 327976 phytoene synthase mRNA, complete cds	NA	coding protein	psRNATarget
NM_001157573.1	ncRNA:23   UCGGGUGUUUACUAUUACUGUUU   1   ||||||||||||||||||=|||| targets:473   AGCCCACAAAUGAUAAUGGCAAA   495 Target Full Sequence	1.5	Zea mays phytoene synthase (LOC100284678), mRNA	NA	coding protein	psRNATarget
EU955531.1	ncRNA:23   UCGGGUGUUUACUAUUACUGUUU   1   ||||||||||||||||||=|||| targets:1084   AGCCCACAAAUGAUAAUGGCAAA   1106 Target Full Sequence	1.5	Zea mays clone 1535793 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008656211.2	ncRNA:23   UCGGGUGUUUACUAUUACUGUUU   1   ||||||||||||||||||=|||| targets:1552   AGCCCACAAAUGAUAAUGGCAAA   1574 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100275370 (LOC100275370), mRNA	NA	coding protein	psRNATarget
XM_020553313.1	ncRNA:23   UCGGGUGUUUACUAUUACUGUUU   1   ||||||||||||||||||=|||| targets:1553   AGCCCACAAAUGAUAAUGGCAAA   1575 Target Full Sequence	1.5	PREDICTED: Zea mays protein binding protein (LOC100280948), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ097793.1	ncRNA:23   UCGGGUGUUUACUAUUACUGUUU   1   ||||||=|||||||||||=|||| targets:23   AGCCCAUAAAUGAUAAUGGCAAA   45 Target Full Sequence	2.5	TSA: Zea mays contig33448, mRNA sequence	NA	coding protein	psRNATarget
EU975987.1	ncRNA:23   UCGGGUGUUUACUAUUACUGUUU   1   |||||||||||||||||*||||| targets:695   AGCCCACAAAUGAUAAUAACAAA   717 Target Full Sequence	1.5	Zea mays clone 507723 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020550202.1	ncRNA:23   UCGGGUGUUUACUAUUACUGUUU   1   ||=|=||||||*||||||||||| targets:7   AGUCUACAAAUCAUAAUGACAAA   29 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103650051 (LOC103650051), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020550201.1	ncRNA:23   UCGGGUGUUUACUAUUACUGUUU   1   ||=|=||||||*||||||||||| targets:7   AGUCUACAAAUCAUAAUGACAAA   29 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103650051 (LOC103650051), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008666858.2	ncRNA:23   UCGGGUGUUUACUAUUACUGUUU   1   ****|||||||||||||||=||| targets:1369   UUGACACAAAUGAUAAUGAUAAA   1391 Target Full Sequence	1.5	PREDICTED: Zea mays fructokinase-like 2, chloroplastic (LOC103643674), mRNA	NA	coding protein	psRNATarget
EU968502.1	ncRNA:23   UCGGGUGUUUACUAUUACUGUUU   1   **||||*||||*||||||||||| targets:1347   UACCCAAAAAUAAUAAUGACAAA   1369 Target Full Sequence	2.5	Zea mays clone 321542 mRNA sequence	NA	coding protein	psRNATarget
NM_001323023.1	ncRNA:23   UCGGGUGUUUACUAUUACUGUUU   1   **||||*||||*||||||||||| targets:1384   UACCCAAAAAUAAUAAUGACAAA   1406 Target Full Sequence	2.5	Zea mays hypothetical protein (LOC107548105), mRNA	NA	coding protein	psRNATarget