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BaseInfo

ncRNA ID novel_zma_miR9466
Species Zea mays
Class miRNA
Genome position Chr6:161646939-161647060 [-]
Reference genome RefGen_v4
Source SRR4237224
Length 24
Mature sequence(if miRNA) 1 - GGCAUUGAAACCAAGUGUGACAUG - 24
Stem-loop(if miRNA) --                 -         A  G      ACC   C G     ACAC   - A
  UGUCAUACUUGGUUUCA UGUCAUUUU GA AUUUUU   CUU U UGCGU    AUG C A
  ||||||||||||||||| ||||||||| || ||||||   ||| | |||||    ||| |
  ACAGUGUGAACCAAAGU ACGGUAAAA CU UAAAAA   GAA A ACGCA    UAC G A
GU                 U         C  G      -CA   - G     GGAA   A A
Stem-loop sequence UGUCAUACUUGGUUUCAUGUCAUUUUAGAGAUUUUUACCCUUCUGUGCGUACACAUGCAAAAGACAUAAGGACGCAGAAAGACAAAAAUGUCCAAAAUGGCAUUGAAACCAAGUGUGACAUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008654448.2
ncRNA:24   GUACAGUGUGAACCAAAGUUACGG   1
  *||*||||||||||||||*||||*
targets:1430   AAUUUCACACUUGGUUUCUAUGCA   1453

2.5 PREDICTED: Zea mays probable LRR receptor-like serine/threonine-protein kinase At1g06840 (LOC103632695), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008654441.2
ncRNA:24   GUACAGUGUGAACCAAAGUUACGG   1
  *||*||||||||||||||*||||*
targets:2014   AAUUUCACACUUGGUUUCUAUGCA   2037

2.5 PREDICTED: Zea mays probable LRR receptor-like serine/threonine-protein kinase At1g06840 (LOC103632695), transcript variant X1, mRNA NA coding protein psRNATarget