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BaseInfo

ncRNA ID	novel_zma_miR9465
Species	Zea mays
Class	miRNA
Genome position	Chr6:162285829-162285970 [-]
Reference genome	RefGen_v4
Source	SRR4237224;SRR4237226
Length	21
Mature sequence(if miRNA)	122 - CAUUCCAAAUUGUAAGACUUU - 142
Stem-loop(if miRNA)	--C          G      U           C      C  A      -     CACUUAGAUAUACACUA       A    AUUCCAAAUU UAAGAC UUUUGGCUUUU UAGAUA AU ACUUUU CUAUG                 UGUCUAG A    |||||||||| |||||| ||||||||||| |||||| || |||||| |||||                 |||||||    UAAGGUUUAA AUUCUG AAAACCGAAAA AUCUAU UA UGGAAA GAUAC                 AUAGAUC C AGA          G      U           A      A  A      U     -----------------       U
Stem-loop sequence	CAUUCCAAAUUGUAAGACUUUUUGGCUUUUCUAGAUACAUAACUUUUCUAUGCACUUAGAUAUACACUAUGUCUAGAACUCUAGAUACAUAGUAAAGGUAAUAUAUCUAAAAAAGCCAAAAUGUCUUAGAAUUUGGAAUAGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008648077.2	ncRNA:21   UUUCA-GAAUGUUAAACCUUAC   1   |||*|-|||||||||||||||| targets:3247   AAACUACUUACAAUUUGGAAUG   3268 Target Full Sequence	3.0	PREDICTED: Zea mays DNA repair and recombination protein RAD54 (LOC103627774), mRNA	NA	coding protein	psRNATarget
XM_008656688.2	ncRNA:21   UUUC-AGAAUGUUAAACCUUAC   1   |||*-||||||||||||||||| targets:1679   AAAUAUCUUACAAUUUGGAAUG   1700 Target Full Sequence	3.0	PREDICTED: Zea mays pto kinase interactor 1 (LOC100281346), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008656689.2	ncRNA:21   UUUC-AGAAUGUUAAACCUUAC   1   |||*-||||||||||||||||| targets:1658   AAAUAUCUUACAAUUUGGAAUG   1679 Target Full Sequence	3.0	PREDICTED: Zea mays pto kinase interactor 1 (LOC100281346), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008674746.2	ncRNA:21   UUUCAGAAUGUUAAACCUUAC   1   ==||*||||||||||||||*| targets:2376   GGAGCCUUACAAUUUGGAAAG   2396 Target Full Sequence	2.5	PREDICTED: Zea mays heterogeneous nuclear ribonucleoprotein A3-like protein 2 (LOC100284566), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008674744.2	ncRNA:21   UUUCAGAAUGUUAAACCUUAC   1   ==||*||||||||||||||*| targets:2365   GGAGCCUUACAAUUUGGAAAG   2385 Target Full Sequence	2.5	PREDICTED: Zea mays heterogeneous nuclear ribonucleoprotein A3-like protein 2 (LOC100284566), transcript variant X1, mRNA	NA	coding protein	psRNATarget