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BaseInfo

ncRNA ID novel_zma_miR9457
Species Zea mays
Class miRNA
Genome position Chr6:96820773-96820989 [+]
Reference genome RefGen_v4
Source SRR4237224
Length 24
Mature sequence(if miRNA) 1 - UUUACGAAGAACCCCUCCCACCAG - 24
Stem-loop(if miRNA) --                                                                       --AU   -AAA   A   AC    UUUAAAAU    AC
  UUUACGAAGAACCCCUCCCACCAGGGGAGGAAGGUGGAAGGGGUGCUUCACAAAAUUGGUACUGUUGUUAG    GCG    UGG UGC  CAGA        GUGC  A
  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||    ||| |||  ||||        ||||
  AAAUGCUUCUUGGGGAGGGUGGUCCCCUCCUUCCACCUUCCCCACGAAGUGUUUUAACCAUGACAACAAUC    UGC    AUC ACG  GUUU        CACG  U
UA                                                                       CCCU   AUAG   -   -A    CCCCAUGC    AG
Stem-loop sequence UUUACGAAGAACCCCUCCCACCAGGGGAGGAAGGUGGAAGGGGUGCUUCACAAAAUUGGUACUGUUGUUAGAUGCGAAAUGGAUGCACCAGAUUUAAAAUGUGCACAUGAGCACCGUACCCCUUUGAGCACUAGAUACGUUCCCCUAACAACAGUACCAAUUUUGUGAAGCACCCCUUCCACCUUCCUCCCCUGGUGGGAGGGGUUCUUCGUAAAAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT064809.1
ncRNA:24   GACCACCCUCCCCAAGAAGCAUUU   1
  *|||*|||||||||||||=|||||
targets:1009   AUGGAGGGAGGGGUUCUUUGUAAA   1032

1.5 Zea mays full-length cDNA clone ZM_BFb0167E07 mRNA, complete cds NA coding protein psRNATarget
XM_020538815.1
ncRNA:24   GACCACCCUCCCCAAGAAGCAUUU   1
  *|||*|||||||||||||=|||||
targets:1039   AUGGAGGGAGGGGUUCUUUGUAAA   1062

1.5 PREDICTED: Zea mays Ribosome-recycling factor chloroplastic (LOC100217177), transcript variant X1, mRNA NA coding protein psRNATarget
EU957184.1
ncRNA:24   GACCACCCUCCCCAAGAAGCAUUU   1
  **||-|||||||||||||=|||||
targets:2085   GCGG-GGGAGGGGUUCUUUGUAAA   2107

1.5 Zea mays clone 1585268 cytochrome c1, heme protein mRNA, complete cds NA coding protein psRNATarget