ncRNA ID | novel_zma_miR9457 |
Species | Zea mays |
Class | miRNA |
Genome position | Chr6:96820773-96820989 [+] |
Reference genome | RefGen_v4 |
Source | SRR4237224 |
Length | 24 |
Mature sequence(if miRNA) | 1 - UUUACGAAGAACCCCUCCCACCAG - 24 |
Stem-loop(if miRNA) |
--                                                                       --AU   -AAA   A   AC    UUUAAAAU    AC   UUUACGAAGAACCCCUCCCACCAGGGGAGGAAGGUGGAAGGGGUGCUUCACAAAAUUGGUACUGUUGUUAG    GCG    UGG UGC  CAGA        GUGC  A   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||    ||| |||  ||||        ||||   AAAUGCUUCUUGGGGAGGGUGGUCCCCUCCUUCCACCUUCCCCACGAAGUGUUUUAACCAUGACAACAAUC    UGC    AUC ACG  GUUU        CACG  U UA                                                                       CCCU   AUAG   -   -A    CCCCAUGC    AG |
Stem-loop sequence | UUUACGAAGAACCCCUCCCACCAGGGGAGGAAGGUGGAAGGGGUGCUUCACAAAAUUGGUACUGUUGUUAGAUGCGAAAUGGAUGCACCAGAUUUAAAAUGUGCACAUGAGCACCGUACCCCUUUGAGCACUAGAUACGUUCCCCUAACAACAGUACCAAUUUUGUGAAGCACCCCUUCCACCUUCCUCCCCUGGUGGGAGGGGUUCUUCGUAAAAU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
BT064809.1 |
|
1.5 | Zea mays full-length cDNA clone ZM_BFb0167E07 mRNA, complete cds | NA | coding protein | psRNATarget | |||||||||
XM_020538815.1 |
|
1.5 | PREDICTED: Zea mays Ribosome-recycling factor chloroplastic (LOC100217177), transcript variant X1, mRNA | NA | coding protein | psRNATarget | |||||||||
EU957184.1 |
|
1.5 | Zea mays clone 1585268 cytochrome c1, heme protein mRNA, complete cds | NA | coding protein | psRNATarget |