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BaseInfo

ncRNA ID	novel_zma_miR9448
Species	Zea mays
Class	miRNA
Genome position	Chr4:222411816-222411867 [-]
Reference genome	RefGen_v4
Source	SRR1997865
Length	24
Mature sequence(if miRNA)	29 - ACUCGGCAAAGAAGCUUUAUCGGU - 52
Stem-loop(if miRNA)	--              CUU    GGU   ACUCGGCAAAGAAG   UAUC   U   ||||||||||||||   ||||   UGAGCCGUUUCUUC   GUGG   C CG              CAU    AUC
Stem-loop sequence	ACUCGGCAAAGAAGCUUUAUCGGUUCCUAGGUGUACCUUCUUUGCCGAGUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI406743.1	ncRNA:24   UGGCUAUUUCGAAGAAACGGCUCA   1   ||||=||||||||||||*|||||| targets:35   ACCGGUAAAGCUUCUUUACCGAGU   58 Target Full Sequence	1.5	Sequence 4868 from Patent EP2074227	NA	coding protein	psRNATarget
JB167204.1	ncRNA:24   UGGCUAUUUCGAAGAAACGGCUCA   1   ||||=||||||||||||*|||||| targets:35   ACCGGUAAAGCUUCUUUACCGAGU   58 Target Full Sequence	1.5	Sequence 4868 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238873.1	ncRNA:24   UGGCUAUUUCGAAGAAACGGCUCA   1   ||||=||||||||||||*|||||| targets:35   ACCGGUAAAGCUUCUUUACCGAGU   58 Target Full Sequence	1.5	Sequence 4868 from Patent EP2985353	NA	coding protein	psRNATarget
JB167569.1	ncRNA:24   UGGCUAUUUCGAAGAAACGGCUCA   1   ||||=||||||||*|||||||||| targets:1   ACCGGUAAAGCUUAUUUGCCGAGU   24 Target Full Sequence	1.5	Sequence 5233 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239238.1	ncRNA:24   UGGCUAUUUCGAAGAAACGGCUCA   1   ||||=||||||||*|||||||||| targets:1   ACCGGUAAAGCUUAUUUGCCGAGU   24 Target Full Sequence	1.5	Sequence 5233 from Patent EP2985353	NA	coding protein	psRNATarget
HI407108.1	ncRNA:24   UGGCUAUUUCGAAGAAACGGCUCA   1   ||||=||||||||*|||||||||| targets:1   ACCGGUAAAGCUUAUUUGCCGAGU   24 Target Full Sequence	1.5	Sequence 5233 from Patent EP2074227	NA	coding protein	psRNATarget
HI409959.1	ncRNA:24   UGGCUAUUUCGAAGAAACGGCUCA   1   ||||=|||||||||||||*||||| targets:14   ACCGGUAAAGCUUCUUUGACGAGU   37 Target Full Sequence	1.5	Sequence 8084 from Patent EP2074227	NA	coding protein	psRNATarget
JB170420.1	ncRNA:24   UGGCUAUUUCGAAGAAACGGCUCA   1   ||||=|||||||||||||*||||| targets:14   ACCGGUAAAGCUUCUUUGACGAGU   37 Target Full Sequence	1.5	Sequence 8084 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242089.1	ncRNA:24   UGGCUAUUUCGAAGAAACGGCUCA   1   ||||=|||||||||||||*||||| targets:14   ACCGGUAAAGCUUCUUUGACGAGU   37 Target Full Sequence	1.5	Sequence 8084 from Patent EP2985353	NA	coding protein	psRNATarget
EU974507.1	ncRNA:24   UGGCUAUU-UCGAAGAAACGGCUCA   1   |=||=|||-|||||||||||||||| targets:435   AUCGGUAACAGCUUCUUUGCCGAGU   459 Target Full Sequence	2.0	Zea mays clone 451014 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
LQ238815.1	ncRNA:24   UGGCUAUUUCGAAGAAACGGCUCA   1   ||||=||*||*||||||||||||| targets:35   ACCGGUAUAGGUUCUUUGCCGAGU   58 Target Full Sequence	2.0	Sequence 4810 from Patent EP2985353	NA	coding protein	psRNATarget
JB167146.1	ncRNA:24   UGGCUAUUUCGAAGAAACGGCUCA   1   ||||=||*||*||||||||||||| targets:35   ACCGGUAUAGGUUCUUUGCCGAGU   58 Target Full Sequence	2.0	Sequence 4810 from Patent EP2559767	NA	coding protein	psRNATarget
HI406685.1	ncRNA:24   UGGCUAUUUCGAAGAAACGGCUCA   1   ||||=||*||*||||||||||||| targets:35   ACCGGUAUAGGUUCUUUGCCGAGU   58 Target Full Sequence	2.0	Sequence 4810 from Patent EP2074227	NA	coding protein	psRNATarget
HI406144.1	ncRNA:24   UGGCUAUUUCGAAGAAACGGCUCA   1   ||||=||*|||*|||||||||||| targets:46   ACCGGUAUAGCCUCUUUGCCGAGU   69 Target Full Sequence	2.5	Sequence 4269 from Patent EP2074227	NA	coding protein	psRNATarget
JB166605.1	ncRNA:24   UGGCUAUUUCGAAGAAACGGCUCA   1   ||||=||*|||*|||||||||||| targets:46   ACCGGUAUAGCCUCUUUGCCGAGU   69 Target Full Sequence	2.5	Sequence 4269 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238274.1	ncRNA:24   UGGCUAUUUCGAAGAAACGGCUCA   1   ||||=||*|||*|||||||||||| targets:46   ACCGGUAUAGCCUCUUUGCCGAGU   69 Target Full Sequence	2.5	Sequence 4269 from Patent EP2985353	NA	coding protein	psRNATarget
HI406962.1	ncRNA:24   UGGCUAUUUCGAAGAAACGGCUCA   1   ||||=||*||*||||||||||||| targets:172   ACCGGUAUAGGUUCUUUGCCGAGU   195 Target Full Sequence	2.0	Sequence 5087 from Patent EP2074227	NA	coding protein	psRNATarget
JB167423.1	ncRNA:24   UGGCUAUUUCGAAGAAACGGCUCA   1   ||||=||*||*||||||||||||| targets:172   ACCGGUAUAGGUUCUUUGCCGAGU   195 Target Full Sequence	2.0	Sequence 5087 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239092.1	ncRNA:24   UGGCUAUUUCGAAGAAACGGCUCA   1   ||||=||*||*||||||||||||| targets:172   ACCGGUAUAGGUUCUUUGCCGAGU   195 Target Full Sequence	2.0	Sequence 5087 from Patent EP2985353	NA	coding protein	psRNATarget